Vicky ChoiAssistant Professor
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Research Interests
2008
Zhu Q., Adam Z., Choi V., Sankoff D.,
"Generalized gene adjacencies, graph bandwidth and clusters in yeast evolution",
RECOMB’08, 2008.
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2007
Choi V., Zheng C., Zhu Q., Sankoff D.,
"Algorithms enabling extraction of syteny blocks from comparative maps.",
The 7th Workshop on Algorithms in Bioinformatics, 2007.
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Choi V., Huang Y., Lam V., Laubenbacher R., Duca K.,
"Using Formal Concept Analysis for Microarray Data Comparison",
The Fifth Asia-Pacific Bioinformatics Conference, APBC2007, 2007.
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Choi V.,
"Faster Algorithms for Constructing Galois Lattice",
DIMACS book on Clustering Challenges in Biological Networks, 2007.
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Choi V., Goyal N.,
"Alogirthmic Approaches to the Identification of Rigid Domains in Proteins",
Special issue of Algorithmica on algorithms for processing protein structures, 2007.
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2006
Choi V., Goyal N.,
"An Efficient Approximation Algorithm for Point Pattern Matching Under Noise",
The 7th International Symposium, Latin American Theoretical Informatics (LATIN 2006), 2006.
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Choi V.,
"On Updating Torsion Angles of Molecular Conformations",
Journal of Chemical Information and Modeling, vol. 46, no. 1, pp. pp438 – 444, 2006.
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2005
V.Choi,
"YUCCA: An Efficient Small Molecule Docking Algorithm",
Chemistry and Biodiversity, vol. 11, pp. 1517 – 1524, 2005.
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2004
Choi V., Agarwal P K., Edelsbrunner H., Rudolph J.,
"Local Search Heuristic for Rigid Protein Docking",
The 4th Workshop on Algorithms in Bioinformatics (WABI 2004), vol. 3240, pp. pp. 218–229, 2004.
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Choi V., Goyal N.,
"A Combinatorial Shape Matching Algorithm for Rigid Protein Docking",
The Fifteenth Annual Symposium on Combinatorial Pattern Matching (CPM 2004), vol. 3109, pp. pp 285-296, 2004.
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2003
Bespamaytnikh S., Choi V., Edelsbrunner H., Rudolph J.,
"Accurate Rigid Protein Docking by Shape Complementarity Alone",
Technical Report, Department of Computer Science, Duke University, 2003.
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Choi V., Farach-Colton M.,
"BARNACLE: An Assembly Algorithm for Clone-based Sequences of Whole Genomes",
Gene, vol. 320, pp. 165-176, 2003.
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2002
and V. Choi, Bailey J., Schuler G., Gu Z., Li P., Farach-Colton M., Eichler E.,
"The Sequence and Assembly of Highly Duplicated Regions in the Human Genome",
Genome Sequencing & Biology meeting , Cold Spring Harbor Laboratory, 2002.
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2001
Choi V., Farach-Colton M.,
"A Simple Sequence Assembly Algorithm for the Human Genome",
RECOMB Satellite Meeting on DNA Sequence Assembly , 2001.
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Choi V., Golin M.,
"Lopsided Trees, II: Algorithms and Applications",
Technical Report, HKUST, 2001.
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Choi V., Golin M.,
"Lopsided Trees, I: Analyses",
Algorithmica, vol. 31, pp. 240-290, 2001.
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1996

