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vchoi's picture

Vicky Choi

Assistant Professor

Office: 2222 KWII
Email: vchoi@cs.vt.edu
Phone: (540) 231-2919
Website: http://people.cs.vt.edu/~vchoi/
Office Hours: McBryde 122-A: TR: 1:45 to 3:30
  • About
  • Publications
  • Courses
 
Research Interests
  • Mathematical Foundations
2008
Zhu Q., Adam Z., Choi V., Sankoff D., "Generalized gene adjacencies, graph bandwidth and clusters in yeast evolution", RECOMB’08, 2008. Tagged BibTex xml
2007
Choi V., Zheng C., Zhu Q., Sankoff D., "Algorithms enabling extraction of syteny blocks from comparative maps.", The 7th Workshop on Algorithms in Bioinformatics, 2007. Tagged BibTex xml
Choi V., Huang Y., Lam V., Laubenbacher R., Duca K., "Using Formal Concept Analysis for Microarray Data Comparison", The Fifth Asia-Pacific Bioinformatics Conference, APBC2007, 2007. Tagged BibTex xml
Choi V., "Faster Algorithms for Constructing Galois Lattice", DIMACS book on Clustering Challenges in Biological Networks, 2007. Tagged BibTex xml
Choi V., Goyal N., "Alogirthmic Approaches to the Identification of Rigid Domains in Proteins", Special issue of Algorithmica on algorithms for processing protein structures, 2007. Tagged BibTex xml
2006
Choi V., Goyal N., "An Efficient Approximation Algorithm for Point Pattern Matching Under Noise", The 7th International Symposium, Latin American Theoretical Informatics (LATIN 2006), 2006. Tagged BibTex xml
Choi V., "On Updating Torsion Angles of Molecular Conformations", Journal of Chemical Information and Modeling, vol. 46, no. 1, pp. pp438 – 444, 2006. Tagged BibTex xml
2005
V.Choi, "YUCCA: An Efficient Small Molecule Docking Algorithm", Chemistry and Biodiversity, vol. 11, pp. 1517 – 1524, 2005. Tagged BibTex xml
2004
Choi V., Agarwal P K., Edelsbrunner H., Rudolph J., "Local Search Heuristic for Rigid Protein Docking", The 4th Workshop on Algorithms in Bioinformatics (WABI 2004), vol. 3240, pp. pp. 218–229, 2004. Tagged BibTex xml
Choi V., Goyal N., "A Combinatorial Shape Matching Algorithm for Rigid Protein Docking", The Fifteenth Annual Symposium on Combinatorial Pattern Matching (CPM 2004), vol. 3109, pp. pp 285-296, 2004. Tagged BibTex xml
2003
Bespamaytnikh S., Choi V., Edelsbrunner H., Rudolph J., "Accurate Rigid Protein Docking by Shape Complementarity Alone", Technical Report, Department of Computer Science, Duke University, 2003. Tagged BibTex xml
Choi V., Farach-Colton M., "BARNACLE: An Assembly Algorithm for Clone-based Sequences of Whole Genomes", Gene, vol. 320, pp. 165-176, 2003. Tagged BibTex xml
2002
and V. Choi, Bailey J., Schuler G., Gu Z., Li P., Farach-Colton M., Eichler E., "The Sequence and Assembly of Highly Duplicated Regions in the Human Genome", Genome Sequencing & Biology meeting , Cold Spring Harbor Laboratory, 2002. Tagged BibTex xml
2001
Choi V., Farach-Colton M., "A Simple Sequence Assembly Algorithm for the Human Genome", RECOMB Satellite Meeting on DNA Sequence Assembly , 2001. Tagged BibTex xml
Choi V., Golin M., "Lopsided Trees, II: Algorithms and Applications", Technical Report, HKUST, 2001. Tagged BibTex xml
Choi V., Golin M., "Lopsided Trees, I: Analyses", Algorithmica, vol. 31, pp. 240-290, 2001. Tagged BibTex xml
1996
Choi V., Golin M., Lopsided Trees: Analyses, Algorithms, and Applications, , pp. pages 538-549, 1996. Tagged BibTex xml

4000 Level Courses

  • CS4104: Data and Algorithm Analysis

5000 Level Courses

  • CS5114: Theory of Algorithms
  • CS5124: Algorithms in Bioinformatics
  • CS5984: Special Study
 
 
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