High End Computing and Computational Science
| The Department of Computer Science has extensive research activities in the design and use of high-end computing systems. Computational scientists and engineers use such large-scale systems to simulate natural and man-made systems, leading to new understanding and solutions to problems ranging from global atomospheric modeling to protein structure and function. Faculty and students associated with the Center for High-End Systems (CHECS) focus on the design, implementation and evaluation of the powerful computing systems that make these kinds of simulations possible. |
Computational Science Laboratory
URL: http://people.cs.vt.edu/~asandu/CSL/index.php
Contact: Adrian Sandu
Computer Systems Research Laboratory
URL: http://www.csrl.cs.vt.edu/
Contact: Srinidhi Varadarajan
The Computing Systems Research Lab (CSRL) seeks to combine advances from multiple areas of computer systems research to design and build novel technologies for the next generation of computing systems. CSRL researchers work across several areas, including programming models, runtime systems, large-scale network simulation, temporal models, routing algorithms for highly dynamic networks and fault tolerance for parallel systems.
Distributed Systems and Storage Laboratory
URL: http://research.cs.vt.edu/dssl/
Contact: Ali Butt
DSSL is interested in the design, development, and evaluation of next-generation storage and file systems. Specifically, the research focuses on tailoring these systems for growing data demands of modern high-end computing applications running on existing as well as emerging multicore architectures. To this end, we aim for innovation in systems that range from large-scale distributed setups to specialized kernel-level optimizations.
Laboratory for Advanced Scientific Computing and Applications
URL: http://research.cs.vt.edu/~lasca/
Contact: Layne Watson
The goal of the Laboratory for Advanced Scientific Computing and Applications (LASCA) is to provide expertise and leadership in high-end scientific computing research and education at Virginia Tech. Located in Torgersen Hall, the laboratory is a visible and strategic center of activity in applied high-computation and assist scientists and engineers in applying high-end computing resources to their problems. By bringing together experts in scientific cp\omputing and its applications, LASCA helps build the kind of multidisciplinary teams needed to address today's most challenging computational science problems.
Multiscale Modeling and Computation
Contact: Yang CaoScape - SCAlable PErformance Laboratory
URL: http://scape.cs.vt.edu/
Contact: Kirk Cameron
The SCAlable PErformance (SCAPE) laboratory is directed by Professor Kirk W. Cameron. Our main research focus is the design, analysis and improvement of scalable systems and applications using emerging technologies.
Structural Bioinformatics and Computational Molecular Biophysics
Contact: Alexey OnufrievOur group uses computational methods to understand dynamics and function of large biomolecular systems such as proteins, DNA, and their complexes. Some of these methods are being developed in our lab. The computations are often performed on supercomputers such as VT's System-X.
Synergy Laboratory
URL: http://synergy.cs.vt.edu/
Contact: Wu Feng
The Systems, Networking, and Renaissance Grokking (SyNeRGy) Lab conducts basic and applied research that provides scientists and engineers with scalable and efficient computational tools that enable them to concentrate on their science and engineering rather than on the computer science and engineering. To that end, we explore a breadth of complementary intellectual activities that span the high- performance & enterprise-wide spectrum --- from systems software to middleware to applications software to tools --- in order to empower cyber-scientists and cyber-engineers of tomorrow.
Systems Software Laboratory
Contact: Godmar Back
Godmar Back
Associate Professor
| Office: | 2211 KWII |
|---|---|
| Email: | gback@cs.vt.edu |
| Phone: | (540) 231-3046 |
| Website: | http://people.cs.vt.edu/~gback/ |
| Office Hours: | McBryde 122-B: TR: 10:45 a.m. to 12:30 p.m. |
|---|
Ali R Butt
Assistant Professor
| Office: | 2227 KWII |
|---|---|
| Email: | butta@cs.vt.edu |
| Phone: | (540) 231-0489 |
| Website: | http://people.cs.vt.edu/~butta/ |
| Office Hours: | By Appointment |
|---|
Kirk W. Cameron
Associate Professor
| Office: | 2212 KWII |
|---|---|
| Email: | cameron@vt.edu |
| Phone: | (540) 231-4238 |
| Website: | http://scape.cs.vt.edu/ |
| Office Hours: | McBryde 122-A: TR: 10:00 to 11:00 a.m. |
|---|
Wu Feng
Associate Professor
| Office: | 2209 KWII |
|---|---|
| Email: | feng@cs.vt.edu |
| Phone: | 540-231-1192 |
| Website: | http://www.cs.vt.edu/~feng |
| Office Hours: |
|---|
Nicholas F. Polys
Affiliate Professor
| Office: | 3030A Torgersen Hall |
|---|---|
| Email: | npolys@vt.edu |
| Phone: | (540) 231-0968 |
| Website: | http://people.cs.vt.edu/~npolys/ |
| Office Hours: | R: 3:00 to 5:00 p.m. and by appointment |
|---|
Naren Ramakrishnan
Professor and Associate Head for Graduate Studies
| Office: | 2050B Torg |
|---|---|
| Email: | naren@vt.edu |
| Phone: | (540) 231-8451 |
| Website: | http://people.cs.vt.edu/~ramakris/ |
| Office Hours: | TR: 9:00 to 11:00 a.m. |
|---|
Calvin J. Ribbens
Associate Professor and Associate Department Head for Undergraduate Studies
| Office: | 1108 KWII |
|---|---|
| Email: | ribbens@vt.edu |
| Phone: | (540) 231-6262 |
| Website: | http://people.cs.vt.edu/~ribbens/ |
| Office Hours: | McBryde 114: MTR 1:30-2:30 p.m. or by appointment |
|---|
Barbara Ryder
J. Byron Maupin Professor and Department Head
| Office: | KWII 1107 |
|---|---|
| Email: | ryder@vt.edu |
| Phone: | (540)231-8452 |
| Website: | http://people.cs.vt.edu/~ryder |
| Office Hours: | By appointment |
|---|
Eli Tilevich
Assistant Professor
| Office: | 2213 KWII |
|---|---|
| Email: | tilevich@cs.vt.edu |
| Phone: | (540) 231-3475 |
| Website: | http://people.cs.vt.edu/~tilevich |
| Office Hours: | By Appointment |
|---|
Srinidhi Varadarajan
Associate Professor
| Office: | 2214 KWII |
|---|---|
| Email: | srinidhi@vt.edu |
| Phone: | (540) 231-5275 |
| Website: | http://www.csrl.cs.vt.edu/~srinidhi/ |
| Office Hours: | McBryde 122-C: TR: 10:00 to 11:00 a.m. |
|---|
Layne T. Watson
Professor, Computer Science and Mathematics
| Office: | 2000B Torgersen |
|---|---|
| Email: | ltw@vt.edu |
| Phone: | (540) 231-7540 |
| Website: | http://people.cs.vt.edu/~ltw/shortvita.html |
| Office Hours: | McBryde 122-A: MWF: 10:00 to 11:00 a.m. |
|---|
Danfeng (Daphne) Yao
Assistant Professor
| Office: | 2222 KWII |
|---|---|
| Email: | danfeng@cs.vt.edu |
| Phone: | (540)231-7787 |
| Website: | http://people.cs.vt.edu/~danfeng |
| Office Hours: | McBryde 122-C: M: 10:30 a.m. to 12:15 p.m. |
|---|
2011
Belgin, M., G. Back, and C. J. Ribbens,
"A library for pattern-based sparse matrix vector multiply",
Intl. Jnl. of Parallel Programming, vol. 39, pp. 62-87, 2011.
Kim, D. K., E. Tilevich, and C. J. Ribbens,
"Dynamic software updates for parallel high-performance applications",
Concurrency & Computation: Practice & Experience, vol. 23, pp. 415-434, 2011.
Mateescu, G., W. Gentzsch, and C. J. Ribbens,
"Hybrid Computing: where HPC meets Grid and Cloud Computing",
Future Generation Computer Systems, vol. 27, pp. 440-453, 2011.
Feng, W. - C., Y. Cao, D. Patnaik, and N. Ramakrishnan,
"Temporal Data Mining for Neuroscience",
GPU computing Gems, Emerald Edition: Elsevier Inc., 2011.
Zhuge, Y., Y. Cao, R. W. Miller, and J. K. Udupa,
"Parallel fuzzy connected image segmentation on GPU Parallel fuzzy connected image segmentation on GPU Parallel fuzzy connected image segmentation on GPU",
Medical Physics, vol. 38, no. 7, pp. 4365–4371, June, 2011.
Hagan, R., and Y. Cao,
"Multi-GPU Load Balancing for In-situ Visualization",
The 2011 International Conference on Parallel and Distributed Processing Techniques and Applications, 2011.
Cao, Y., D. Patnaik, S. Ponce, J. Archuleta, P. Butler, W. - C. Feng, and N. Ramakrishnan,
"Parallel Mining of Neuronal Spike Streams on Graphics Processing Units",
International Journal of Parallel Programming: Springer Netherlands, pp. 1-28, 2011.
Ramesh, B., C. J. Ribbens, and S. Varadarajan,
"Is it time to rethink distributed shared memory systems?",
17th IEEE International Conference on Parallel & Distributed Systems (ICPADS 2011): IEEE Computer Society, pp. 212-219, 2011.
2010
Sudarsan, R., and C. J. Ribbens,
"Design and performance of a scheduling framework for resizable parallel applications",
Parallel Computing, vol. 36, pp. 48-64, 2010.
Belgin, M., G. Back, and C. J. Ribbens,
"Operation stacking for ensemble computations with variable convergence",
Intl. Jnl. of High Performance Computing Applications, vol. 24, pp. 194-212, 2010.
Belgin, M., G. Back, and C. J. Ribbens,
"Applicability of pattern-based sparse matrix representation for real applications",
International Conference on Computational Science (ICCS 2010), Amsterdam, Elsevier, pp. 203-211, 2010.
Kang, P., N. Selvarasu, N. Ramakrishnan, C. J. Ribbens, D. Tafti, and S. Varadarajan,
"Dynamic tuning of algorithmic parameters of parallel scientific codes",
International Conference on Computational Science (ICCS 2010), Amsterdam, Elsevier, pp. 145-153, 2010.
Ramakrishnan, N., S. Tadepalli, L. T. Watson, R. F. Helm, M. Antoniotti, and B. Mishra,
"Reverse engineering dynamic temporal models of biological processes and their relationships",
Proc. National Academy of Sciences, vol. 107, pp. 12511-12516, 2010.
Newkirk, J. T., L. T. Watson, and M. M. Stanisic,
"Determining the number of inverse kinematic solutions of a constrained parallel mechanism using a homotopy algorithm",
ASME J. Mechanisms Robotics, vol. 2, 2010.
Thacker, W. I., J. Zhang, L. T. Watson, J. B. Birch, M. A. Iyer, and M. W. Berry,
"Algorithm 905: SHEPPACK: modified Shepard algorithm for interpolation of scattered multivariate data",
ACM Trans. Math. Software, vol. 37, pp. 1-20, 2010.
Cao, Z., D. R. Easterling, L. T. Watson, D. Li, K. W. Cameron, and W. C. Feng,
"Power saving experiments for large-scale global optimization",
Internat J. Parallel Emergent Distrib. Systems, vol. 25, pp. 381-400, 2010.
Zhang, J., L. T. Watson, C. A. Beattie, and Y. Cao,
"Radial basis function collocation for the chemical master equation",
Internat. J. Comput. Methods, vol. 7, pp. 477-498, 2010.
Viana, F. A. C., R. T. Haftka, and L. T. Watson,
"Why not run the efficient global optimization algorithm with multiple surrogates?",
Structural Dynamics, and Materials Conf., Orlando, FL, 2010.
Pu, Y., L. T. Watson, and Y. Cao,
"Stiffness detection and reduction in discrete stochastic simulation of biochemical systems",
2010 Spring Simulation Multiconference, High Performance Computing Symp., Vista, CA, Soc. for Modelling and Simulation Internat., pp. 41-48, 2010.
Deshpande, S. G., and L. T. Watson,
"Sequential approximate optimization in the problem solving environment WBCSim",
2010 Spring Simulation Multiconference, High Performance Computing Symp., Vista, CA, Soc. for Modelling and Simulation Internat., pp. 49-56, 2010.
Radcliffe, N. R., D. R. Easterling, L. T. Watson, M. L. Madigan, and K. A. Bieryla,
"Results of two global optimization algorithms applied to a problem in biomechanics",
2010 Spring Simulation Multiconference, High Performance Computing Symp., Vista, CA, Soc. for Modelling and Simulation Internat., pp. 117-123, 2010.
Zhang, L., and L. T. Watson,
"The expected fitness cost of a mutation fixation under the one-dimensional Fisher model",
6th Internat. Symp. on Bioinformatics Research and Appl., vol. LNBI 6053/2010, Springer-Verlag, Berlin, pp. 241-252, 2010.
Pu, Y., S. Lee, D. C. Samuels, L. T. Watson, and Y. Cao,
"Hybrid modeling and simulation of insulin secretion pathway in pancreatic islets",
10th IEEE Internat. Conf. on Bioinformatics and Bioengineering, Philadelphia, PA, pp. 156-161, 2010.
Cao, Y., S. I. Park, and L. T. Watson,
"A novel computation-to-core mapping scheme for robust facet image modeling on GPUs",
2010 Internat. Conf. on Parallel and Distributed Processing Techniques and Appl., vol. 1, Las Vegas, NV, CSREA Press, pp. 189-195, 2010.
Easterling, D. R., L. T. Watson, and M. Madigan,
"The DIRECT algorithm applied to a problem in biomechanics with conformal mapping",
2010 Internat. Conf. on Scientific Computing, Las Vegas, NV, CSREA Press, pp. 128-133, 2010.
HOssain, M. S., S. Tadepalli, L. T. Watson, I. Davidson, R. F. Helm, and N. Ramakrishnan,
"Unifying dependent clustering and disparate clustering for nonhomogeneous data",
16th ACM SIGKDD Conf. on Knowledge Discovery and Data Mining, Washington, DC, pp. 593-602, 2010.
Ghommem, M., M. R. Hajj, L. T. Watson, D. T. Mook, R. D. Snyder, and P. S. Beran,
"Deterministic global optimization of flapping wing motions for micro air vehicles",
13th AIAA/ISSMO Multidisciplinary Analysis Optimization conf., Fort Worth, TX, 2010.
Liu, Z., C. A. Shaffer, U. J. Mobassera, L. T. Watson, and Y. Cao,
"Multistate modeling and simulation for regulatory networks",
2010 Winter Simulation Conference, pp. 631-642, 2010.
Cao, Y., D. Patnaik, S. Ponce, J. Archuleta, P. Butler, W. - C. Feng, and N. Ramakrishnan,
"Towards Chip-on-Chip Neuroscience: Fast Mining of Neuronal Spike Streams Using Graphics Hardware",
CF '10: Proceedings of the 7th ACM international conference on Computing frontiers, no. 978-1-4503-0044-5, Bertinoro, Italy, ACM, pp. 1–10, May 17 - 19, 2010.
2009
Belgin, M., G. Back, and C. J. Ribbens,
"A Pattern-based Sparse Matrix Representation for Memory-efficient SMVM Kernels",
ICS '09: Proceedings of the 23rd international conference on Supercomputing: ACM, New York, pp. 100-109, 2009.
Sudarsan, R., and C. J. Ribbens,
"Scheduling Resizable Parallel Applications",
IPDPS'09: the 2009 IEEE International Symposium on Parallel & Distributed Processing: IEEE Computer Society, Washington, DC, 2009.
Sudarsan, R., C. J. Ribbens, and D. Farkas,
"Dynamic Resizing of Parallel Scientific Simulations: A Case Study Using LAMMPS",
International Conference on Computational Science (ICCS 2009): Springer, Heidelberg, pp. 175-184, 2009.
Abstract
Kang, P., N. Selvarusu, N. Ramakrishnan, C. J. Ribbens, D. Tafti, and S. Varadarajan,
"Modular, Fine-grained Adaptation of Parallel Programs",
International Conference on Computational Science (ICCS 2009): Springer, Heidelberg, pp. 269-279, 2009.
Wainer, G. A., C. A. Shaffer, R. M. McGraw, and M. J. Chinni,
"Proceedings of the 2009 Spring Simulation Multiconference, SpringSim 2009",
2009 Spring Simulation Multiconference, SpringSim 2009, San Diego, California, USA, SCS/ACM, 03/2009.
Ahn, T. - H., L. T. Watson, Y. Cao, C. A. Shaffer, and W. T. Baumann,
"Cell cycle modeling for budding yeast with stochastic simulation algorithms",
Computer Modeling in Engineering and Sciences, vol. 51, pp. 27--52, 2009.
Ponce, S., H. Jing, S. I. Park, C. Khoury, F. Quek, and Y. Cao,
An Application-Oriented Approach for Accelerating Data-Parallel Computation with Graphics Processing Unit,
, no. TR-09-05: Computer Science Department, Virginia Polytechnical Institute and State University, March, 2009.
Archuleta, J., Y. Cao, W. - C. Feng, and T. Scogland,
"Multi-Dimensional Characterization of Temporal Data Mining on Graphics Processors",
Parallel and Distributed Processing Symposium, 2009. IPDPS 2009. IEEE International, Roma, Italy, May, 2009.
Cao, Y., D. P. S. abd Ponce, J. Archuleta, P. Butler, W. - C. Feng, and N. Ramakrishnan,
"Towards Chip-on-Chip Neuroscience: Fast Mining of Frequent Episodes Using Graphics Processors",
arXiv.org: Virginia Polytechnical Institute and State University, May, 2009.
2008
Panning, T. D., L. T. Watson, N. A. Allen, K. C. Chen, C. A. Shaffer, and J. J. Tyson,
"Deterministic parallel global parameter estimation for a model of the budding yeast cell cycle",
Journal of Global Optimization, vol. 40, no. 4, Hingham, MA, USA, Kluwer Academic Publishers, pp. 719–738, 2008.
Wang, P., R. Randhawa, C. A. Shaffer, Y. Cao, and W. T. Baumann,
"Converting Macromolecular Regulatory Models from Deterministic to Stochastic Formulation",
Proceedings of High Performance Computing and Simulation 2008 (HPCS 2008), pp. 385–392, April, 2008.
Tilevich, E., and G. Back,
"Program, Enhance Thyself! Demand-Driven Pattern-Oriented Program Enhancement",
AOSD '08: Proceedings of the Seventh International Conference on Aspect-Oriented Software Development, Brussels, Belgium, ACM Press, April, 2008.
Back, G., and A. Bailey,
"Increasing the visibility of web-based information retrieval systems via client-side mash-ups",
JCDL '08: Joint Conference on Digital Libraries, Pittsburgh, PA, ACM Press, June, 2008.
C.N., G., J. Sundararaman, A. R. Butt, and G. Back,
ReplayCache: Exploiting Similarities for Predicting the Future,
, San Jose, CA, 2008.
Miller, C., A. R. Butt, and P. Butler,
"On Utilization of Contributory Storage in Desktop Grids",
Proc. International Parallel and Distributed Processing Symposium (IPDPS'08), Miami, FL, April, 2008.
Lorch, M., D. G. Kafura, I. Fisk, K. Keahy, T. Freeman, A. S. Rana, and F. Wurtherwein,
"Authorization and identity mapping services for the Open Science Grid",
International Journal of High Performance Computing and Networking, vol. 5, no. No. 3, pp. 144-155, 2008.
Li, D., S. Huang, and K. W. Cameron,
"CG-Cell: An NPB Benchmark Implementation on Cell Broadband Engine",
Theoretical Computer Science, M. Conti, P. Das, N. Santoro (Eds.), Elsevier, Amsterdam, 2008.
Li, D., S. Huang, and K. W. Cameron,
"CG-Cell: An NPB Benchmark Implementation on Cell Broadband Engine",
International Conference on Distributed Computing and Networking (ICDCN 2008), Kolkata, India, January, 2008.
Blagojevic, F., X. Feng, K. W. Cameron, and D. Nikolopoulos,
"Modeling Mulitigrain Parallelism on Heterogeneous Multicore Processors: A Case Study of the Cell BE",
International Conference on High Performance Embedded Architectures & Compilers (HiPEAC 2008), Goteberg, Sweden, January, 2008.
Li, D., H. Pyla, and K. W. Cameron,
"System-level, Thermal-aware, Fully-loaded Processor Scheduling",
Proceedings of the 4th Workshop on High-performance, Power-aware Computing (HPPAC), Miami, FL, pp. 8 pgs, 2008.
Arisoylu, M., and W. - C. Feng,
"Achieving Edge-Based Fairness in a Multi-Hop Environment",
5th IEEE Consumer Communications and Networking Conference, Las Vegas, Nevada, USA, January, 2008.
Balaji, P., W. - C. Feng, and H. Lin,
"Semantic-based Distributed I/O with the ParaMEDIC Framework.",
17th ACM/IEEE International Symposium on High-Performance Computing, Boston, Massachusetts, USA, June, 2008.
Balaji, P., W. - C. Feng, J. Archuleta, H. Lin, R. Kettimuthu, R. Thakur, and X. Ma,
"Semantics-based Distributed I/O for mpiBLAST",
ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, Salt Lake City, Utah, USA, February, 2008.
Banerjee, A., W. - C. Feng, D. Ghosal, and B. Mukherjee,
"Algorithms for Integrated Routing and Scheduling for Aggregating Data from Distributed Resources on a Lambda Grid",
IEEE Transactions on Parallel and Distributed Systems, vol. 19, no. 1, January, 2008.
Feng, W. - C., X. Feng, and R. Ge,
"Green Supercomputing Comes of Age",
IT Professional, vol. 10, no. 1, January, 2008.
Gardner, M., and W. - C. Feng,
"Towards a Virtual Ecosystem for K-8 Education",
International Conference on the Virtual Computing Initiative (ICVCI), May, 2008.
Huang, S., Y. Luo, and W. - C. Feng,
"Modeling and Analysis of Power in Multicore Network Processors",
4th IEEE Workshop on High-Performance, Power-Aware Computing (in conjunction with the 22nd International Parallel & Distributed Processing Symposium), Miami, Florida, USA, April, 2008.
Curtis-Maury, M., A. Shah, F. Blagojevic, D. S. Nikolopoulos, B. R. de Supinski, and M. Schulz,
"Prediction Models for Multi-dimensional Power-Performance Optimization on Many Cores",
Proceedings of the 17th International Conference on Parallel Architectures and Compilation Techniques, Toronto, Canada, IEEE Computer Society, 2008.
Curtis-Maury, M., F. Blagojevic, C. D. Antonopoulos, and D. S. Nikolopoulos,
"Prediction-Based Power-Performance Adaptation of Multithreaded Scientific Codes",
IEEE Transactions on Parallel and Distributed Systems, vol. 19, no. 9: IEEE Computer Society, September, 2008.
Blagojevic, F., M. Curtis-Maury, J. - S. Yeom, S. Schneider, and D. S. Nikolopoulos,
"Scheduling Asymmetric Parallelism on a PlayStation3 Cluster",
Proceedings of the 8th IEEE International Symposium on Cluster Computing and the Grid, Lyon, France, IEEE Computer Society, pp. 146-153, 2008.
Rafique, M. M., A. R. Butt, and D. S. Nikolopoulos,
"DMA-based Prefetching for I/O-intensive Workloads on the Cell Architecture",
Proceedings of the 2008 ACM International Conference on Computing Frontiers, Ischia, Italy, Association for Computing Machinery, pp. 23-32, May, 2008.
Aji, A., F. Blagojevic, W. - C. Feng, and D. S. Nikolopoulos,
"Cell-SWat: Modeling and Scheduling Wavefront Computations on the Cell Broadband Engine",
Proceedings of the 2008 ACM International Conference on Computing Frontiers, Ischia, Italy, Association for Computing Machinery, pp. 13-22, May, 2008.
Nikolopoulos, D. S., G. Back, J. Tripathi, and M. Curtis-Maury,
"VT-ASOS: Holistic System Software Customization for Many Cores",
Proceedings of the Workshop on the NSF Next Generation Software Program, held in conjunction with the 22nd IEEE International Parallel and Distributed Processing Symposium, Miami, FL, IEEE Computer Society, pp. 5pp, 2008.
Rafique, M. M., A. R. Butt, and D. S. Nikolopoulos,
"Supporting I/O-intensive Workloads on the Cell Architecture",
Proceedings of the 6th USENIX Conference on File and Storage Systems, San Jose, CA, USENIX: The Advanced Computing Systems Association, pp. 2pp, 2008.
Blagojevic, F., X. Feng, K. W. Cameron, and D. S. Nikolopoulos,
"Modeling Multi-grain Parallelism on Heterogeneous Multicore Processors: A Case Study of the Cell BE",
Proceedings of the 3rd International Conference on High-Performance Embedded Architectures and Compilers, Lecture Notes in Computer Science Volume 4917, Göteborg, Sweden, Springer, pp. 38-52, February, 2008.
Akhtar, I., A. H. Nayfeh, and C. J. Ribbens,
"A galerkin model of the pressure field in incompressible flows",
46th AIAA Aerospace Sciences Meeting and Exhibit, Reno, NV, January, 2008.
Abstract
2007
Blagojevic, F., A. Stamatakis, C. Antonopoulos, and D. S. Nikolopoulos,
"RAxML-CELL: Parallel Phylogenetic Tree Construction on the Cell Broadband Engine",
Proceedings of the 21st IEEE/ACM International Parallel and Distributed Processing Symposium, 2007.
Back, G., and D. S. Nikolopoulos,
"Application-Specific System Customization on Many-Core Platforms: The VT-ASOS Framework",
STMCS: Second Workshop on Software Tools for Multi-Core Systems, San Jose, CA, March, 2007.
Bailey, A., and G. Back,
"Retrieving Known Items with LibX",
The Serials Librarian, vol. 53, no. 4: Haworth Press, Inc., pp. 125–140, 2007.
Feizabadi, S., and G. Back,
"Garbage collection-aware utility accrual scheduling",
Real-Time Systems, vol. 36, no. 1-2, Norwell, MA, USA, Kluwer Academic Publishers, pp. 3–22, 2007.
Yang, S., A. R. Butt, Y. C. Hu, and S. P. Midkiff,
"Lightweight Monitoring of the Progress of Remotely Executing Computations",
{Lecture Notes in Computer Science: Proceedings of the 18th International Workshop on Languages and Compilers for Parallel Computing}, vol. 4339, pp. 319–333, 2007.
Butt, A. R., C. Gniady, and C. Y. Hu,
"The Performance Impact of Kernel Prefetching on Buffer Cache Replacement Algorithms",
IEEE Transactions on Computers, vol. 56, no. 7, pp. 889–908, 2007.
Konanki, P., and A. R. Butt,
"FlexiCache: {A} Flexible Interface for Customizing {L}inux File System Buffer Cache Replacement Policies",
Work-in-Progress, 5th USENIX FAST, San Jose, CA, Feb., 2007.
Miller, C., P. Butler, A. Shah, and A. R. Butt,
"PeerStripe: A P2P-Based Large-File Storage for Desktop Grids",
Proceedings of IEEE HPDC, Monterey, CA, June, 2007.
Miller, C., P. Butler, A. Shah, and A. R. Butt,
On Utilization of Contributory Storage in Desktop Grids,
, no. TR-07-16: Virginia Polytechnic Institute and State University, Blacksburg, VA, May, 2007.
Konanki, P., and A. R. Butt,
"On Supporting Disconnected Operation in Grid Computing",
Poster in IEEE International Conference on High Performance Computing (HiPC 2007), Goa, India, Dec., 2007.
Feng, W. - C., and K. W. Cameron,
"The Green500 List: Encouraging Sustainable Supercomputing",
IEEE Computer, vol. 40, no. 12, 2007.
Cameron, K. W., R. Ge, and X. - H. Sun,
"lognP and log3P: Accurate analytical models of point-to-point communication in distributed systems",
IEEE Transactions on Computers, vol. 56, no. 3, 2007.
Cameron, K. W., H. K. Pyla, and S. Varadarajan,
"Tempest: A portable tool to identify hot spots in parallel code",
proceedings of 2007 International Conference on Parallel Processing (ICPP 07), Xi An, China, September, 2007.
Ge, R., X. Feng, W. - C. Feng, and K. W. Cameron,
"CPU Miser: A performance-Directed, Run-Time System for Power-aware Clusters",
Proceedings of 2007 International Conference on Parallel Processing (ICPP 07), Xi An, China, September, 2007.
Tolentino, M., J. Turner, and K. W. Cameron,
"Memory-MISER: A performance-constrained runtime system for powerscalable clusters",
Proceedings of ACM International Conference on Computing Frontiers, May, 2007.
Ge, R., and K. W. Cameron,
"Power-Aware Speedup",
Proceedings of the 21st IEEE International Parallel and Distributed Processing Symposium (IPDPS 07), March, 2007.
Feng, X., K. W. Cameron, B. Smith, and C. Sosa,
"Building the Tree of Life on Tera-scale Systems",
Proceedings of the 21st IEEE International Parallel and Distributed Processing Symposium (IPDPS 07), March, 2007.
Nikolopoulos, D., and K. W. Cameron,
"Synthesizing Parallel Programming Models for Asymmetric Multi-Core Systems",
Proceedings of the 11th Workshop on High Performance Embedded Computing, MIT Lincoln Lab, 2007.
Tolentino, M., J. Turner, and K. W. Cameron,
"An Implementation of Page Allocation Shaping for Energy Efficiency",
Proceedings of the 3rd Workshop on High-performance, Power-aware Computing (HPPAC), 2007.
Cameron, K. W., R. Ge, and X. Feng,
"Designing Computational Clusters for Performance and Power",
Advances in Computers, Amsterdam, Elsevier Science BV, 2007.
Archuleta, J. S., W. - C. Feng, and E. Tilevich,
"A Pluggable Framework for Parallel Pairwise Sequence Search",
International Conference of the IEEE Engineering in Medicine and Biology Society, Lyon, France, August, 2007.
Archuleta, J. S., E. Tilevich, and W. - C. Feng,
"A Maintainable Software Architecture for Fast and Modular Bioinformatics Sequence Search",
23rd IEEE International Conference on Software Maintenance, Paris, France, October, 2007.
Balaji, P., W. - C. Feng, S. Bhagvat, D. Panda, R. Thakur, and W. Gropp,
"Analyzing the Impact of Supporting Out-of-Order Communication on In- Order Performance with iWARP",
ACM/IEEE SC|07: The International Conference on High-Performance Computing, Networking, Storage, and Analysis, Reno, Nevada, USA, November, 2007.
Feng, W. - C., and K. W. Cameron,
"The Green500 List: Encouraging Sustainable Supercomputing",
IEEE Computer, vol. 40, no. 12, December, 2007.
Feng, W. - C., A. Ching, and C. -hsing Hsu,
"Green Supercomputing in a Desktop Box",
3rd IEEE Workshop on High-Performance, Power-Aware Computing (in conjunction with the 21st International Parallel & Distributed Processing Symposium), Long Beach, California, March, 2007.
Feng, W. - C., V. Vishwanath, J. Leigh, and M. Gardner,
"High-Fidelity Monitoring in Virtual Computing Environments",
International Conference on the Virtual Computing Initiative (ICVCI), Research Triangle Park, NC, May, 2007.
Narayanaswamy, G., P. Balaji, and W. - C. Feng,
"An Analysis of 10-Gigabit Ethernet Protocol Stacks in Multicore Environments",
15th International Symposium on High-Performance Interconnects (HotI 2007), Palo Alto, California, August, 2007.
Thorsen, O., B. Smith, C. P. Sosa, K. Jiang, H. Lin, A. Peters, and W. - C. Feng,
"Parallel Genomic Sequence-Search on a Massively Parallel System",
ACM International Conference on Computing Frontiers, Ischia, Italy, May, 2007.
Pyla, P. S., H. R. Hartson, J. D. Arthur, T. L. Smith-Jackson, and M. A. Perez-Quinones,
"Evaluating Ripple: Experiences from a Cross Pollinated SE-UE Study",
Computer/Human Interaction Conference (CHI 2007); Workshop: Increasing the Impact of Usability Work in Software Development, San Jose, CA, April 2007.
Blagojevic, F., D. S. Nikolopoulos, A. Stamatakis, C. D. Antonopoulos, and M. Curtis-Maury,
"Runtime Scheduling of Dynamic Parallelism on Accelerator-Based Multi-core Systems",
Parallel Computing, vol. 33, no. 10-11: Elsevier, pp. 700-719, 2007.
Nikolopoulos, D. S.,
"System Software Challenges and Opportunities on Asymmetric Multi-core Processors",
Abstracts of the 2007 Falls Creek Fall Conference, Panel on Key Challenges Presented by Next Generation Hardware Systems, Nashville, TN, pp. 1pp, September, 2007.
Chernikov, A., C. D. Antonopoulos, N. Chrisochoides, S. Schneider, and D. S. Nikolopoulos,
"Experience with Memory Allocators for Parallel Mesh Generation on Multi-core Architectures",
Proceedings of the 10th ISGG Conference on Numerical Grid Generation, Heraklion, Greece, International Society of Grid Generation, pp. 10pp, September, 2007.
Curtis-Maury, M., K. Singh, S. A. McKee, F. Blagojevic, D. S. Nikolopoulos, B. A. de Supinski, and M. Schulz,
"Identifying Energy-Efficient Concurrency Levels using Machine Learning",
Proceedings of the 2007 Workshop on Green Computing, held in conjunction with the IEEE Cluster 2007 Conference, Austin, TX, pp. 8pp, September, 2007.
Nikolopoulos, D. S., and K. W. Cameron,
"Synthesizing Parallel Programming Models for Asymmetric Multi-Core Systems",
Abstracts of the Eleventh Workshop on High Performance Embedded Computing, Lexington, MA, pp. 1pp, September, 2007.
Stamatakis, A., F. Blagojevic, D. S. Nikolopoulos, and C. D. Antonopoulos,
"Exploring new Search Algorithms and Hardware for Phylogenetics: RAxML meets the IBM Cell",
Journal of VLSI Signal Processing, vol. 48, no. 3: Springer, pp. 271-286, 2007.
Mills, R. T., C. Yue, A. Stathopoulos, and D. S. Nikolopoulos,
"Runtime and Programming Support for Memory Adaptation in Scientific Applications via Local Disk and Remote Memory",
Journal of Grid Computing, vol. 5, no. 2: Springer, pp. 213-234, 2007.
Blagojevic, F., A. Stamatakis, C. Antonopoulos, and D. S. Nikolopoulos,
"RAxML-CELL: Parallel Phylogenetic Tree Construction on the Cell Broadband Engine",
Proceedings of the 21st IEEE/ACM International Parallel and Distributed Processing Symposium, Long Beach, CA, IEEE Computer Society, pp. 10pp, March, 2007.
Blagojevic, F., D. S. Nikolopoulos, A. Stamatakis, and C. Antonopoulos,
"Dynamic Mulitgrain Parallelization on the Cell Broadband Engine",
Proceedings of the 12th ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, San Jose, CA, Association for Computing Machinery, pp. 90-100, March, 2007.
Curtis-Maury, M., C. D. Antonopoulos, and D. S. Nikolopoulos,
"A Comparison of Online and Offline Strategies for Program Adaptation",
Proceedings of the 45th Annual ACM Southeast Conference, Winston-Salem, NC, Association for Computing Machinery, pp. 162-167, March, 2007.
Back, G., and D. S. Nikolopoulos,
"Application-Specific Customization on Many-Core Platforms: The VT-ASOS Framework",
Proceedings of the Second Workshop on Software and Tools for Multi-Core Systems, held in conjunction with the 2007 International Symposium on Code Generation and Optimization, San Jose, CA, pp. 6pp, March, 2007.
Ruscio, J. F., M. F. Heffner, and S. Varadarajan,
"DejaVu: Transparent User- Level Checkpointing, Migration, and Recovery for Distributed Systems",
IPDPS2007, pp. 1-10, 2007.
Sudarsan, R., and C. J. Ribbens,
"“ReSHAPE: A framework for dynamic resizing and scheduling of homogeneous applications in a parallel environment",
Proceedings of the International Conference on Parallel Processing (ICPP-2007), Washington, DC, IEEE Computer Society, pp. 44, 2007.
Sudarsan, R., and C. J. Ribbens,
"Efficient multidimensional data redistribution for resizable parallel computations",
Proceedings, Fifth International Symposium on Parallel and Distributed Processing and Applications (ISPA-07), Berlin, Springer-Verlag, pp. 182–194, 2007.
Belgin, M., C. J. Ribbens, and G. Back,
"An operation stacking framework for large ensemble computations",
Proceedings of the 21st ACM International Conference on Supercomputing (ICS07), New York, B. Smith (ed.), 2007, ACM, pp. 83–92, 2007.
2006
Allen, N. A., K. C. Chen, C. A. Shaffer, J. J. Tyson, and L. T. Watson,
"Computer Evaluation of Network Dynamics Models with Application to Cell Cycle Control in Budding Yeast",
IEE Proceedings – Systems Biology, vol. 153, no. 1, pp. 13–21, January, 2006.
Kremenek, T., P. Twohey, G. Back, D. Engler, and A. Ng,
"From Uncertainty to Belief: Inferring the Specification Within",
accepted to Seventh Symposium on Operating Systems Design and Implementation (OSDI '06), Seattle, WA, USENIXASSOC, pp. 161–176, 2006.
Bergstrom, C., S. Varadarajan, and G. Back,
"The Distributed Open Network Emulator: Using Relativistic Time for Distributed Scalable Simulation",
Proceedings of the 20th Workshop on Principles of Advanced and Distributed Simulation, Singapore, IEEE Computer Society, pp. 19–28, may, 2006.
Feizabadi, S., and G. Back,
"Automatic Memory Management in Utility Accrual Scheduling Environments",
Proceedings of the 9th IEEE International Symposium on Object and component-oriented Real-time distributed Computing (ISORC 2006), Gyeongju, South Korea, IEEE, pp. 11–19, 2006.
Bailey, A., and G. Back,
"LibX - A Firefox Extension for Enhanced Library Access",
Library Hi Tech, vol. 24, no. 2, pp. 290–304, 2006.
Gniady, C., A. R. Butt, C. Y. Hu, and Y. - H. Lu,
"Program Counter-Based Prediction Techniques for Dynamic Power Management",
IEEE Transactions on Computers, vol. 55, no. 6, pp. 641–658, 2006.
Yang, S., A. R. Butt, X. Fang, C. Y. Hu, and S. P. Midkiff,
"A Fair, Secure and Trustworthy Peer-to-Peer Based Cycle-Sharing System",
Journal of Grid Computing: Special issue on Global and Peer-to-Peer Computing, vol. 4, no. 3, pp. 265–286, 2006.
Butt, A. R., T. A. Johnson, Y. Zheng, and C. Y. Hu,
"Kosha: A Peer-to-Peer Enhancement for the Network File System",
Journal of Grid Computing: Special issue on Global and Peer-to-Peer Computing, vol. 4, no. 3, pp. 323–341, 2006.
Cameron, K. W., X. Feng, and R. Ge,
"The Argus Prototype: Aggregate Use of Load Modules as a High density Supercomputer",
Concurrency and Computation: Practice and Experience, vol. 18, no. 1, 2006.
Feng, X., K. W. Cameron, and D. A. Buell,
"High Performance, Bayesian-based Phylogenetic Inference Framework",
Proceedings of the 18th IEEE/ACM High Performance Computing, Networking and Storage Conference (SC), 2006.
Cao, Y., and L. Petzold,
"Accuracy Limitations and the Measurement of Errors in the Stochastic Simulation of Chemically Reacting Systems",
J. Comput. Phys., 2006.
Balaji, P., W. - C. Feng, and D. K. Panda,
"Bridging the Ethernet-Ethernot Performance Gap",
IEEE Micro (Special Issue: High-Performance Interconnects), vol. 26, no. 3, May, 2006.
Banerjee, A., W. - C. Feng, B. Mukherjee, and D. Ghosal,
"End-system Performance Aware Transport over Optical Circuit-Switched Connections",
IEEE INFOCOM High-Speed Networking Workshop: The Terabits Challenge (in conjunction with the 25th IEEE INFOCOM), Barcelona, Spain, April, 2006.
Banerjee, A., W. - C. Feng, B. Mukherjee, and D. Ghosal,
"RAPID: An End-System Aware Protocol for Intelligent Data-Transfer over LambdaGrids",
20th International Parallel & Distributed Processing Symposium (IPDPS’06), Rhodes, Greece, April, 2006.
Ching, A., W. - C. Feng, H. Lin, X. Ma, and A. Choudhary,
"Exploring I/O Strategies for Parallel Sequence Database Search Tools with S3aSim",
15th IEEE International Symposium on High-Performance Distributed Computing (HPDC’06), Paris, France, June, 2006.
Datta, P., S. Sharma, and W. - C. Feng,
"A Feedback Mechanism for Network Scheduling in LambdaGrids",
6th IEEE/ACM Symposium on Cluster Computing and the Grid (CCGrid’06), Singapore, May, 2006.
Datta, P., W. - C. Feng, and S. Sharma,
"End-System Aware, Rate-Adaptive Protocol for Network Transport in LambdaGrid Environments",
ACM/IEEE SC|06: The International Conference on High-Performance Computing, Networking, Storage, and Analysis, Tampa, FL, November, 2006.
Feng, W. - C.,
"Global Climate Warming? Yes … In the Machine Room",
Clusters and Computational Grids for Scientific Computing, September, 2006.
Feng, W. - C.,
"Real-Time Transcription of Radiology Dictation: A Case Study for Multimedia TabletPCs",
Microsoft eScience Workshop, Baltimore, Maryland, October, 2006.
Gans, J., W. - C. Feng, and M. Wolinsky,
"Whole Genome, Physics-Based Sequence Alignment for Pathogen Signature Design",
12th SIAM Conference on Parallel Processing for Scientific Computing, February, 2006.
Gardner, M. K., W. - C. Feng, J. S. Archuleta, H. Lin, and X. Ma,
"Parallel Genomic Sequence-Searching on an Ad-Hoc Grid: Experiences, Lessons Learned, and Implications",
ACM/IEEE SC|06: The International Conference on High-Performance Computing, Networking, Storage, and Analysis, Tampa, FL, November, 2006.
Lin, H., X. Ma, W. - C. Feng, A. Geist, and N. Samatova,
"Efficient Data Handling in Comparative Genome Analysis Applications",
12th SIAM Conference on Parallel Processing for Scientific Computing, February, 2006.
Sharma, S., C. -hsing Hsu, and W. - C. Feng,
"Making a Case for a Green500 List",
2nd IEEE Workshop on High-Performance, Power-Aware Computing (in conjunction with the 20th International Parallel & Distributed Processing Symposium), Rhodes, Greece, April, 2006.
Vishwanath, V., P. Balaji, W. - C. Feng, J. Leigh, and D. K. Panda,
"A Case for UDP Offload Engines in LambdaGrids",
4th International Workshop on Protocols for Fast Long-Distance Networks (PFLDnet’06), Nara, Japan, February, 2006.
Curtis-Maury, M., D. S. Nikolopoulos, and C. D. Antonopoulo,
"Dynamic Program Stirring on Multiple Cores: How Hardware Performance Monitors Can Help Regulate Performance, Power, and Temperature Simultaneously",
Proceedings of the Second Workshop on Functionality of Hardware Performance Monitors, held in conjunction with the 39th IEEE/ACM International Symposium on Microarchitecture, Orlando, FL, pp. 2pp, 2006.
Curtis-Maury, M., C. D. Antonopoulos, and D. S. Nikolopoulos,
"PACMAN: A Performance Counters Manager for Intel Hyperthreaded Processors",
Proceedings of the 3rd International Conference on the Quantitative Evaluation of Systems, Riverside, CA, IEEE Computer Society, pp. 141-144, September, 2006.
Yue, C., R. T. Mills, A. Stathopoulos, and D. S. Nikolopoulos,
"Runtime Support for Memory Adaptation in Scientific Workloads via Local Disk and Remote Memory",
Proceedings of the 15th IEEE International Symposium on High Performance Distributed Computing, Paris, France, IEEE Computer Society, pp. 183-194, June, 2006.
Curtis-Maury, M., J. Dzierwa, C. D. Antonopoulos, and D. S. Nikolopoulos,
"Online Power-Performance Adaptation of Multithreaded Programs using Event-Based Prediction",
Proceedings of the 20th ACM International Conference on Supercomputing, Queensland, Australia, ACM Press, pp. 157-166, June, 2006.
Schneider, S., C. D. Antonopoulos, and D. S. Nikolopoulos,
"Scalable Locality-Conscious Multithreaded Memory Allocation",
Proceedings of the 2006 ACM SIGPLAN International Symposium on Memory Management, Ottawa, Canada, Association for Computing Machinery, pp. 84-94, June, 2006.
Curtis-Maury, M., J. Dzierwa, C. D. Antonopoulos, and D. S. Nikolopoulos,
"Online Strategies for High-Performance Power-Aware Thread Execution on Emerging Multiprocessors",
Proceedings of the Second Workshop on High-Performance Power-Aware Computing, Rhodes, Greece, IEEE Computer Society, pp. 8pp, April, 2006.
Nikolopoulos, D. S.,
"Facing the Challenges of Multicore Processor Technologies using Autonomic System Software",
Proceedings of the 7th Workshop on Parallel and Distributed Scientific and Engineering Computing with Applications, held in conjunction with the 20th IEEE/ACM International Parallel and Distributed Processing Symposium, Rhodes, Greece, IEEE Computer Society, April, 2006.
Ding, X., D. S. Nikolopoulos, S. Jiang, and X. Zhang,
"MESA: Reducing Cache Conflicts by Integrating Static and Run-Time Methods",
Proceedings of the 2006 IEEE International Symposium on Performance Analysis of Systems and Software, Austin, TX, IEEE Computer Society, pp. 189-198, March, 2006.
Wang, Y., K. Otitoju, T. Liu, S. Kim, and D. Bowman,
"The Effect of Gaps Between Displays on Spatial Perception and Cognition Tasks in Virtual Environments",
International Journal of Virtual Reality, vol. 6, no. 2, pp. 33-41, 2006.
2005
Feizabadi, S., and G. Back,
"Java Garbage Collection Scheduling in Utility Accrual Scheduling Environments",
3rd Workshop on Java Technologies for Real-time and Embedded Systems (JTRES) colocated with OOPSLA 2005: ACM, October, 2005.
Back, G., and W. C. Hsieh,
"The KaffeOS Java Runtime System",
ACM Transactions on Programming Languages and Systems, vol. 27, no. 4, New York, NY, USA, ACM Press, pp. 583–630, 2005.
Zhang, R., A. R. Butt, and Y. C. Hu,
"MetaStream: Topology-Aware Peer-to-Peer On-Demand Streaming",
Proc. IFIP Networking Conference, Waterloo, Canada, pp. 1–14, May, 2005.
Yang, S., A. R. Butt, Y. C. Hu, and S. P. Midkiff,
"Trust but Verify: Monitoring Remotely Executing Programs for Progress and Correctness",
Proc. ACM SIGPLAN PPoPP, Chicago, IL, pp. 196–205, June, 2005.
Butt, A. R., C. Gniady, and C. Y. Hu,
"The Performance Impact of Kernel Prefetching on Buffer Cache Replacement Algorithms",
Proceedings of the ACM SIGMETRICS International Conference on Measurement and Modeling of Computer Systems, June, 2005.
Cameron, K. W., R. Ge, and X. Feng,
"High-Performance, Power-Aware Distributed Computing for Scientific Applications",
IEEE Computer, vol. 38, no. 11, November, 2005.
Byna, S., K. W. Cameron, and X. - H. Sun,
"Memory-Aware Communication -An Experimental Study with MPI",
Parallel Processing Letters, vol. 15, no. 4, pp. pp 357-365, December, 2005.
Cameron, K. W., X. Feng, and R. Ge,
"Performance-constrained Distributed DVS Scheduling for Scientific Applications on Power-aware Clusters",
Proceedings of the 17th IEEE/ACM High Performance Computing, Networking and Storage Conference (SC 2005), pp. 15 pgs., November, 2005.
Feng, X., R. Ge, and K. W. Cameron,
"Power and Energy Profiling of Scientific Applications on Distributed Systems",
Proceedings of the 19th IEEE International Parallel and Distributed Processing Symposium (IPDPS 05), pp. 10 pgs, April, 2005.
Feng, X., R. Ge, and K. W. Cameron,
"ARGUS: Supercomputing in 1/10 Cubic Meter",
Proceedings of the International Conference on Parallel and Distributed Computing and Networks (PDCN 2005), February, 2005.
Ge, R., X. Feng, and K. W. Cameron,
"Improvement of Power-Performance Efficiency for High-End Computing",
Proceedings of the 19th IEEE International Parallel and Distributed Processing Symposium (IPDPS 05) - HPPAC '05 Workshop, Denver, CO, April, 2005.
Ayyorgun, S., S. Vanichpun, and W. - C. Feng,
"Q-Composer and CpR: A Probabilistic Synthesizer and Regulator of Traffic",
24th IEEE Conference on Computer Communications (INFOCOM'05), Miami, Florida, March, 2005.
Balaji, P., W. - C. Feng, Q. Gao, R. Noronha, W. Yu, and D. K. Panda,
"Head-to-TOE Evaluation of High-Performance Sockets over Protocol Offload Engines",
7th IEEE International Conference on Cluster Computing (CLUSTER'05), Boston, Massachusetts, September, 2005.
Banerjee, A., W. - C. Feng, D. Ghosal, and B. Mukherjee,
"Routing and Scheduling Large File Transfers over Lambda Grids",
3rd International Workshop on Protocols for Fast Long-Distance Networks (PFLDnet'05), Lyon, France, February, 2005.
Feng, W. - C.,
"The Importance of Being Low Power in High-Performance Computing",
Cyberinfrastructure Technology Watch Quarterly (CTWatch Quarterly), vol. 1, no. 3, August, 2005.
Feng, W. - C., P. Balaji, and C. Baron,
"Performance Characterization of a 10-Gigabit Ethernet TOE",
13th IEEE International Symposium on High-Performance Interconnects (Hot Interconnects), Palo Alto, California, August, 2005.
Hsu, C. -hsing, W. - C. Feng, and J. S. Archuleta,
"Towards Efficient Supercomputing: Choosing the Right Efficiency Metric",
IEEE International Parallel & Distributed Processing Symposium (IPDPS) Workshop on High-Performance, Power-Aware Computing, April, 2005.
Feng, W. - C.,
"The Evolution of Power-Aware, High-Performance Clusters: From the Datacenter to the Desktop",
IEEE International Parallel & Distributed Processing Symposium (IPDPS) Workshop on High-Performance, Power-Aware Computing, April, 2005.
Hsu, C. -hsing, and W. - C. Feng,
"A Feasibility Analysis of Power Awareness in Commodity-Based High-Performance Clusters",
7th IEEE International Conference on Cluster Computing (CLUSTER'05), Boston, Massachusetts, September, 2005.
Hsu, C. -hsing, and W. - C. Feng,
"When Discreteness Meets Continuity: Energy-Optimal DVS Scheduling Revisited",
Los Alamos, February, 2005.
Hsu, C. -hsing, W. - C. Feng, and J. S. Archuleta,
"Towards Efficient Supercomputing: A Quest for the Right Metric",
1st IEEE Workshop on High-Performance, Power-Aware Computing (in conjunction with the 19th International Parallel & Distributed Processing Symposium), Denver, Colorado, April, 2005.
Hsu, C. -hsing, and W. - C. Feng,
"Reducing Overheating-Induced Failures via Performance-Aware CPU Power Management",
6th International Conference on Linux Clusters: The HPC Revolution 2005, April, 2005.
Hsu, C. -hsing, and W. - C. Feng,
"Effective Dynamic Voltage Scaling through CPU-Boundedness Detection",
Lecture Notes in Computer Science, February, 2005.
Hsu, C. -hsing, and W. - C. Feng,
"A Power-Aware Run-Time System for High-Performance Computing",
ACM/IEEE SC2005: The International Conference on High-Performance Computing, Networking, and Storage, Seattle, Washington, November, 2005.
Hurwitz, J.(G.), and W. - C. Feng,
"Analyzing MPI Performance over 10-Gigabit Ethernet",
Journal of Parallel and Distributed Computing, Special Issue: Design and Performance of Networks for Super-, Cluster-, and Grid-Computing, vol. 65, no. 10, October, 2005.
Jin, C., D. Wei, S. H. Low, G. Buhrmaster, J. Bunn, H. D. Choe, L. R. Cottrell, J. C. Doyle, W. - C. Feng, O. Martin, et al.,
"FAST TCP: From Theory to Experiments",
IEEE Network, vol. 19, no. 1, January, 2005.
Zhang, X., L. N. Bhuyan, and W. - C. Feng,
"Anatomy of UDP and M-VIA for Cluster Communication",
Journal of Parallel and Distributed Computing, Special Issue: Design and Performance of Networks for Super-, Cluster-, and Grid-Computing, vol. 65, no. 10, October, 2005.
Antonopoulos, C. D., D. S. Nikolopoulos, and T. S. Papatheodorou,
"Scheduling Algorithms with Bus Bandwidth Considerations for SMPs",
High Performance Computing: Paradigm and Infrastructure: Wiley, pp. 313-332, 2005.
Schneider, S., C. D. Antonopoulos, and D. S. Nikolopoulos,
"Factory: An Object-Oriented Parallel Programming Substrate for Deep Multiprocessors",
Proceedings of the 2005 International Conference on High Performance Computing and Communications, Lecture Notes in Computer Science Volume 3726, Sorrento, Italy, Springer, pp. 223-232, September, 2005.
Curtis-Maury, M., T. Wang, C. D. Antonopoulos, and D. S. Nikolopoulos,
"Integrating Multiple Forms of Multithreaded Execution on SMT Processors: A Quantitative Study with Scientific Workloads",
Proceedings of the Second International Conference on the Quantitative Evaluation of Systems, Torino, Italy, IEEE Computer Society, pp. 199-209, September, 2005.
Lawson, B., C. Yue, E. Smirni, and D. S. Nikolopoulos,
"Power-Aware Resource Allocation via Online Simulation with Multiple-Queue Backfilling",
Proceedings of the 7th Workshop on Performability Modeling of Computer and Communication Systems, held in conjunction with the Second International Conference on the Quantitative Evaluation of Systems, Torino, Italy, pp. 7pp, September, 2005.
Wang, T., C. D. Antonopoulos, and D. S. Nikolopoulos,
"smt-SPRINTS: Software Precomputation with Intelligent Streaming for Resource-Constrained SMTs",
Proceedings of the EuroPar'2007, Lecture Notes in Computer Science Volume 3648, Lisbon, Portugal, Springer, pp. 710-719, August, 2005.
Antonopoulos, C. D., X. Ding, A. Chernikov, F. Blagojevic, D. S. Nikolopoulos, and N. Chrisochoides,
"Multigrain Parallel Delaunay Mesh Generation: Challenges and Opportunities for Multithreaded Architectures",
Proceedings of the 19th ACM International Conference on Supercomputing, Cambridge, MA, Association for Computing Machinery, pp. 367-376, June, 2005.
Antonopoulos, C. D., N. Chrisochoides, and D. S. Nikolopoulos,
"2-D Parallel Constrained Delaunay Mesh Generation: A Multigrain Approach on Deep Multiprocessors",
Workshop in Programming Models for HPCS Ultra-Scale Applications, held in conjunction with the 19th ACM International Conference on Supercomputing, Cambridge, MA, June, 2005.
Curtis-Maury, M., X. Ding, C. D. Antonopoulos, and D. S. Nikolopoulos,
"An Evaluation of OpenMP on Current and Emerging Multithreaded Processors",
Proceedings of the First International Workshop on OpenMP, Lecture Notes in Computer Science Volume 4315, Eugene, OR, Springer, pp. 133-142, June, 2005.
McGregor, R. L., C. D. Antonopoulos, and D. S. Nikolopoulos,
"Scheduling Algorithms for Effective Thread Pairing on Hybrid Multiprocessors",
Proceedings of the 19th International Parallel and Distributed Processing Symposium, Denver, CO, IEEE Computer Society, pp. 10pp, April, 2005.
Antonopoulos, C. D., and D. S. Nikolopoulos,
"Using Hardware Counters for Continuous Online Optimization: Lessons and Challenges",
Proceedings of the First Workshop on Hardware Performance Monitor Design and Functionality, held in conjunction with the 11th International Symposium on High Performance Computer Architecture, San Francisco, CA, pp. 5pp, February, 2005.
Mukherjee, J., and S. Varadarajan,
"Develop once Deploy Anywhere: Achieving Adaptivity with a Runtime Linker/Loader Framew",
Proceedings of the 4th Workshop on Adaptive Reflective Middleware, Middleware 2005, pp. 1-6, 2005.
Mukherjee, J., and S. Varadarajan,
"Weaves: A Framework for Reconfigurable Programming",
International Journal of Parallel Processing, vol. 33, no. 2, pp. 279 – 305, June, 2005.
Belgin, M., and C. J. Ribbens,
"Improving the performance of HPC applications by using operation stacking",
Proceedings of ICCSE2005, The International Conference on Computational Science and Engineering, H. Dag and Y. Deng (eds.), Istanbul Technical University, pp. 183–190, 2005.
Ribbens, C. J., S. Varadarajan, M. Chinnusamy, and G. Swaminathan,
"Balancing computational science and computer science research on a terascale computing facility",
Proceedings of ICCS 2005, the 5th International Conference on Computational Science, Berlin, V. Sunderam, G. van Albada, P. Sloot, J. Dongarra (eds.), Springer-Verlag, pp. 60–67, 2005.
2004
Skidmore, R. R., A. Verstak, N. Ramakrishnan, T. S. Rappaport, L. T. Watson, J. He, S. Varadarajan, C. A. Shaffer, J. Chen, K. K. Bae, et al.,
"Towards integrated PSEs for wireless communications: experiences with the S4W and SitePlanner\textregistered projects",
SIGMOBILE Mob. Comput. Commun. Rev., vol. 8, no. 2, New York, NY, USA, ACM, pp. 20–34, 2004.
Zhang, R., A. R. Butt, and Y. C. Hu,
"Topology-Aware Peer-to-Peer On-Demand Streaming",
Poster in 12th IEEE International Conference on Network Protocols (ICNP 2004), Berlin, Germany, Oct., 2004.
Wurtherwein, F., and M. Lorch,
"The PRIMA Grid Authorization System",
International Journal of Grid Computing, vol. 2, no. 3, pp. 279-298, September 2004.
Cameron, K. W., and R. Ge,
"Predicting and Evaluating Distributed Communication Performance",
Proceedings of the 16th IEEE/ACM International Conference on High Performance Computing and Communications (SC 2004), November, 2004.
Byna, S., K. W. Cameron, and X. - H. Sun,
"Quantification of Memory Communication",
High Performance Scientific and Engineering Computing: Hardware/Software Support, Boston, MA, Kluwer Academic Publishers, pp. pp. 31-44, 2004.
Ayyorgun, S., and W. - C. Feng,
"A Deterministic Characterization of Network Traffic for Average Performance Guarantee",
38th Annual Conference on Information Sciences and Systems (CISS'04), Princeton, New Jersey, March, 2004.
Ayyorgun, S., and W. - C. Feng,
"A Systematic Approach for Providing End-to-end Probabilistic QoS Guarantee",
13th IEEE International Conference on Computer Communications and Networks (ICCCN'04), Chicago, Illinois, October, 2004.
Engelhart, A., M. K. Gardner, and W. - C. Feng,
"Re-Architecting Flow-Control Adaptation for Grid Environments",
18th IEEE International Parallel and Distributed Processing Symposium, (IPDPS'04), Santa Fe, New Mexico, April, 2004.
Feng, W. - C., and C. -hsing Hsu,
"The Origin and Evolution of Green Destiny",
IEEE Cool Chips VII: An International Symposium on Low-Power and High-Speed Chips, Yokohama, Japan, April, 2004.
Feng, W. - C., and C. -hsing Hsu,
"Green Destiny and Its Evolving Parts",
Innovative Supercomputer Architecture Award, 19th International Supercomputer Conference, Heidelberg, Germany, June, 2004.
Feng, W. - C.,
"Green Destiny: A 240-Node Compute Cluster in Five Square Feet",
IEEE Distinguished Visitors Program, October, 2004.
Gardner, M. K., S. Thulasidasan, and W. - C. Feng,
"User-Space Auto-Tuning for TCP Flow Control in Computational Grids",
Computer Communications, Special Issue on Network Support for Grid Computing,, vol. 27, no. 14, September, 2004.
Gardner, M. K., W. Deng, S. T. Markham, C. L. Mendes, W. - C. Feng, and D. A. Reed,
"A High-Fidelity Software Oscilloscope for Globus",
GlobusWorld 2004, San Francisco, California, January, 2004.
Hurwitz, J.(G.), and W. - C. Feng,
"End-to-End Performance of 10-Gigabit Ethernet on Commodity Systems",
IEEE Micro, vol. 24, no. 1, January, 2004.
Veeraraghavan, M., X. Zheng, W. - C. Feng, H. Lee, E. Chong, and H. Li,
"Scheduling and Transport for File Transfers on High-Speed Optical Circuits",
Journal of Grid Computing, vol. 1, no. 4, June, 2004.
Heath, L. S., C. J. Ribbens, and S. V. Pemmaraju,
"Processor-Efficient Sparse Matrix-Vector Multiplication",
Computers and Mathematics with Applications , vol. 48, pp. pp. 589-608. , 2004.
Antonopoulos, C. D., D. S. Nikolopoulos, and T. S. Papatheodorou,
"Realistic Workload Scheduling Policies for Taming the Memory Bandwidth Bottleneck of SMPs",
Proceedings of the 11th International Conference on High Performance Computing, Lecture Notes in Computer Science Volume 3296, Bangalore, India, Springer, pp. 286-296, December, 2004.
Wang, T., F. Blagojevic, and D. S. Nikolopoulos,
"Runtime Support for Integrating Precomputation and Thread-Level Parallelism on Simultaneous Multithreaded Processors",
Proceedings of the 7th ACM/SIGPLAN Workshop on Languages, Compilers and Runtime Support for Scalable Systems, volume 81 of ACM International Conference Proceedings Series, Houston, TX, Association for Computing Machinery, pp. 12pp, October, 2004.
Antonopoulos, C. D., N. Chrisochoides, and D. S. Nikolopoulos,
"Exploiting Simultaneous Multithreading for Parallel Mesh Generation: A Multigrain Approach on Deep Multiprocessors",
Poster abstracts of the 13th International Meshing Roundtable, Williamsburg, VA, pp. 1pp, September, 2004.
Mills, R. T., A. Stathopoulos, and D. S. Nikolopoulos,
"Adapting to Memory Pressure from within Scientific Applications on Multiprogrammed COWs",
Proceedings of the 18th International Parallel and Distributed Processing Symposium, Santa Fe, NM, IEEE Computer Society, pp. 10pp, April, 2004.
Nikolopoulos, D. S.,
"Dynamic Tiling for Effective Use of Shared Caches on Multithreaded Processors",
International Journal of High Performance Computing and Networking, vol. 2, no. 1: Inderscience Publishers, pp. 22-35, 2004.
Nikolopoulos, D. S., and A. Stathopoulos,
"Application Awareness in Adaptation Middleware: Balancing Transparency with Performance and Adaptivity",
Abstracts of the 2004 SIAM Conference on Parallel Processing for Scientific Computing, Miniworkshop on Adaptivity in Parallel and Distributed Computing through Interoperating Systems and Applications, San Francisco, CA, pp. 1pp, February, 2004.
Ram, L. DaSilva, and S. Varadarajan,
"Admission Control by Implicit Signaling in Support of Voice over IP over ADSL",
Journal of Computer Networks, vol. 44, pp. 757-772, 2004.
Varadarajan, S., and J. Mukherjee,
"The Weaves Framework for Compositional Simulation",
Proceedings of the Operations Research Society, Birmingham, England, March, 2004.
Varadarajan, S., and R. Nance,
"Relativistic Time: The Evolution of a Temporal Model for Multi-Domain Simulation",
Proceedings of the Operations Research Society, Birmingham, England, March, 2004.
Varadarajan, S.,
"The Weaves Runtime Framework",
IEEE International Parallel and Distributed Systems Symposium (IPDPS) 2004, Santa Fe, April , 2004.
Tadepalli, S., C. J. Ribbens, and S. Varadarajan,
"GEMS: A job management system for fault tolerant grid computing",
Proceedings High Performance Computing Symposium 2004, San Diego, CA, J. Meyer (ed.), Soc. for Modeling and Simulation Internat., pp. 59-66, 2004.
2003
Cameron, K. W., and X. - H. Sun,
"Quantifying Locality Effect in Data Access Delay: Memory logP",
Proceedings of the 17th IEEE International Parallel and Distributed Processing Symposium (IPDPS 03), pp. 8 pgs, April, 2003.
Ashby, S., D. H. Bailey, M. Blackmon, P. Bohrer, K. W. Cameron, C. DeTar, J. Dongarra, D. Dwoyer, P. Freeman, A. Gheith, et al.,
"Performance Modeling, Metrics and Specifications",
Workshop on The Roadmap for the Revitalization of High-End Computing,, Washington, DC, Computer Research Association, pp. 59-68, 2003.
Ayyorgun, S., and W. - C. Feng,
"A Deterministic Definition of Burstiness for Network Traffic Characterization",
Los Alamos, June, 2003.
Ayyorgun, S., and W. - C. Feng,
"A Probabilistic Definition of Burstiness Characterization",
Los Alamos, May, 2003.
Ayyorgun, S., and W. - C. Feng,
"A Restricted Matching Problem on Bipartite Graphs",
Los Alamos, September, 2003.
Ayyorgun, S., and W. - C. Feng,
"A Systematic Approach to Probablistic Quality of Service Guarantees in Communication Networks",
Los Alamos, September, 2003.
Ayyorgun, S., and W. - C. Feng,
"A New Traffic Model and Its Implications over Multiplexers and Switches",
Los Alamos, September, 2003.
Darling, A. E., L. Carey, and W. - C. Feng,
"The Design, Implementation, and Evaluation of mpiBLAST",
ClusterWorld Conference & Expo and the 4th International Conference on Linux Cluster: The HPC Revolution 2003, San Jose, California, June, 2003.
Feng, W. - C.,
"Making a Case for Efficient Supercomputing",
ACM Queue, vol. 1, no. 7, October, 2003.
Feng, W. - C., M. K. Gardner, M. E. Fisk, and E. Weigle,
"Automatic Flow-Control Adaptation for Enhancing Network Performance in Computational Grids",
Journal of Grid Gomputing (inaugural issue), vol. 1, no. 1, 2003.
Feng, W. - C.,
"Green Destiny + mpiBLAST = Bioinfomagic",
10th International Conference on Parallel Computing (ParCo), September, 2003.
Feng, W. - C., and S. Vanichpun,
"Enabling Compatibility Between TCP Reno and TCP Vegas",
IEEE Symposium on Applications and the Internet (SAINT 2003), Orlando, Florida, January, 2003.
Feng, W. - C., J.(G.) Hurwitz, H. Newman, S. Ravot, L. R. Cottrell, O. Martin, F. Coccetti, C. Jin, D. Wei, and S. H. Low,
"Optimizing 10-Gigabit Ethernet for Networks of Workstations, Clusters and Grids: A Case Study",
SC2003: High-Performance Networking and Computing Conference, Phoenix, Arizona, November, 2003.
Gardner, M. K., W. - C. Feng, M. Broxton, A. Engelhart, and J.(G.) Hurwitz,
"MAGNET: A Tool for Debugging, Analysis and Adaptation in Computing Systems",
3rd IEEE/ACM International Symposium on Cluster Computing and the Grid (CCGrid'2003), Tokyo, Japan, May, 2003.
Gardner, M. K., M. Broxton, A. Engelhart, and W. - C. Feng,
"MUSE: A Software Oscilloscope for Clusters and Grids",
17th IEEE International Parallel and Distributed Processing Symposium (IPDPS 2003), Nice, France, April, 2003.
Hurwitz, J.(G.), and W. - C. Feng,
"Initial End-to-End Performance Evaluation of 10-Gigabit Ethernet",
IEEE Hot Interconnects: A Symposium on High-Performance Interconnects, Palo Alto, California, August, 2003.
Kapadia, A. C., W. - C. Feng, and R. Campbell,
"GREEN: A Practical Solution for Ensuring Fairness in a Best-Effort Network",
Los Alamos, 2003.
Thulasidasan, S., W. - C. Feng, and M. K. Gardner,
"Optimizing GridFTP Through Dynamic Right-Sizing",
IEEE Symposium on High-Performance Distributed Computing. (HPDC-2003), Seattle, Washington, June, 2003.
Veeraraghavan, M., X. Zheng, H. Lee, M. K. Gardner, and W. - C. Feng,
"CHEETAH: Circuit-Switched High-Speed End-to-End Transport Architecture",
SPIE/IEEE Optical Networking and Computer Communications Conference (OptiComm), Dallas TX, October, 2003.
Nikolopoulos, D. S.,
"Code and Data Transformations for Improving Shared Cache Performance on SMT Processors",
Proceedings of the 5th International Symposium on High Performance Computing, Lecture Notes in Computer Science Volume 2858, Tokyo-Odaiba, Japan, Springer, pp. 54-69, October, 2003.
Antonopoulos, C. D., D. S. Nikolopoulos, and T. S. Papatheodorou,
"Scheduling Algorithms with Bus Bandwidth Considerations for SMPs",
Proceedings of the 32nd International Conference on Parallel Processing, Kaohsiung, Taiwan, IEEE Computer Society, pp. 547-554, October, 2003.
Nikolopoulos, D. S.,
"Quantifying Contention and Balancing Memory Load on Hardware DSM Multiprocessors",
Journal of Parallel and Distributed Computing, vol. 63, no. 9: Elsevier, pp. 866-886, sep, 2003.
Nikolopoulos, D. S.,
"Programming Environments for Multigrain Parallelization",
Abstracts of the 2003 EURESCO Conference on Advanced Environments and Tools for High-Performance Computing, Albufeira, Portugal, pp. 1pp, jun, 2003.
Nikolopoulos, D. S., and C. D. Polychronopoulos,
"Adaptive Scheduling under Memory Constraints on Non-Dedicated Computational Farms",
Future Generation Computer Systems, vol. 19, no. 4: Elsevier, pp. 505-519, May, 2003.
Nikolopoulos, D. S.,
"Malleable Memory Mapping: User-Level Control of Memory Bounds for Effective Program Adaptation",
Proceedings of the 17th International Parallel and Distributed Processing Symposium, Nice, France, IEEE Computer Society, pp. 8pp, April, 2003.
Nikolopoulos, D. S., E. Artiaga, E. Ayguadé, and J. Labarta,
"Scaling Non-Regular Shared-Memory Codes by Reusing Custom Loop Schedules",
Scientific Programming, vol. 11, no. 2: IOS Press, pp. 143-158, aug, 2003.
Ribbens, C. J.,
"High performance computing",
Virginia Tech Scholarly Review, pp. 11-15, 2003.
Mateescu, G., C. J. Ribbens, and L. T. Watson,
"A domain decomposition preconditioner for hermite collocation problems",
Num. Meth. PDEs, vol. 19, pp. 135-151, 2003.
Bora, P., C. J. Ribbens, S. Prabhakar, G. Swaminathan, M. Chinnusamy, A. Jeyakumar, and B. Diaz-Acosta,
"Issues in runtime algorithm selection for grid environments",
Proceedings of the International Workshop on Challenges of Large Applications in Distributed Environments, Los Alamitos, CA, I. Banicescu (ed.), IEEE Press, pp. 80–87, 2003.
Ribbens, C. J., P. Bora, D. M. Ventra, J. Hauck, S. Prabhakar, and C. Taylor,
"From cluster to Grid: a case study in scaling-up a molecular electronics simulation code",
Proceedings of the High Performance Computing Symposium 2003, San Diego, I. Banicescu (ed.), Society for Modeling and Simulation International, pp. 54-62, 2003.
Goncalves, M. A., G. Panchanathan, U. Ravindranathan, A. Krowne, E. A. Fox, F. Jagodzinski, and L. Cassel,
"The XML Log Standard for Digital Libraries: Analysis, Evolution, and Deployment",
Proceedings JCDL 2003, Third Joint ACM/IEEE-CS Joint Conference on Digital Libraries, Houston, pp. 312-314, May 2003.
2002
He, J., L. T. Watson, N. Ramakrishnan, C. A. Shaffer, A. Verstak, J. Jiang, K. Bae, and W. H. Tranter,
"Dynamic Data Structures for a Direct Search Algorithm",
Comput. Optim. Appl., vol. 23, no. 1, Norwell, MA, USA, Kluwer Academic Publishers, pp. 5–25, 2002.
Ramakrishnan, N., L. T. Watson, D. G. Kafura, C. J. Ribbens, and C. A. Shaffer,
"Programming Environments for Multidisciplinary Grid Communities",
Concurrency and Computation: Practice and Experience, vol. 13–15, pp. 1241–1273, Nov–December, 2002.
Back, G.,
Isolation, Resource Management and Sharing in the KaffeOS Java Runtime System,
: University of Utah, 2002.
Back, G.,
"DataScript - A Specification and Scripting Language for Binary Data",
Proceedings of the ACM Conference on Generative Programming and Component Engineering Proceedings (GPCE 2002), published as LNCS 2487, Pittsburgh, {PA}, ACM, pp. 66-77, oct, 2002.
Goasguen, S., A. R. Butt, K. D. Colby, and M. Lundstrom,
"Parallelization of Nanoscale Device Simulator nanoMOS 2.0 Using a 100 node Linux Cluster",
Proc. IEEE Nanotechnology Conference, Washington, DC, Aug., 2002.
Maxwell, M. T., and K. W. Cameron,
"Optimizing Application Performance: A Case Study Using LMBench",
ACM Crossroads, September, 2002.
Byna, S., K. W. Cameron, and X. - H. Sun,
"Memory-Aware Communication -An Experimental Study with MPI",
Proceedings of the 1st International Workshop on Hardware/Software Support for Parallel and Distributed Scientific and Engineering Computing (SPDSEC02), September, 2002.
Darling, A. E., and W. - C. Feng,
"BLASTing Off with Green Destiny",
IEEE Computer Society Bioinformatics Conference, (CSB'02), Palo Alto, California, August, 2002.
Darling, A. E., and W. - C. Feng,
"mpiBLAST: Parallelization of BLAST for Computational Clusters",
SC 2002: High-Performance Networking and Computing Conference (SC2002), Baltimore, Maryland, November, 2002.
Feng, W. - C., M. Warren, and E. Weigle,
"The Bladed Beowulf: A Cost-Effective Alternative to Traditional Beowulfs",
IEEE International Conference on Cluster Computing (IEEE Cluster 2002), Chicago, Illinois, September, 2002.
Feng, W. - C.,
"Green Destiny: A 240-Node Compute Cluster in One Cubic Meter",
Eli Lilly, September, 2002.
Feng, W. - C., A. C. Kapadia, and S. Thulasidasan,
"GREEN: Proactive Queue Management over a Best-Effort Network",
IEEE GlobeCom (GLOBECOM 2002), Taipei, Taiwan, November, 2002.
Feng, W. - C., and J. Al-Muhtadi,
"A General Security Infrastructure for Wireless Communication",
IEEE International Conference on Networks (ICN 2002), Atlanta, Georgia, August, 2002.
Feng, W. - C., M. Warren, and E. Weigle,
"Honey, I Shrunk the Beowulf!",
International Conference on Parallel Processing 2002 (ICPP 2002), Vancouver, Canada, August, 2002.
Feng, W. - C., M. K. Gardner, and J. R. Hay,
"The MAGNeT Toolkit: Design, Evaluation, and Implementation",
Journal of Supercomputing, vol. 23, no. 1, August, 2002.
Feng, A. C., A. C. Kapadia, W. - C. Feng, and G. G. Belford,
"Packet Spacing: An Enabling Mechanism for the Delivery of Multimedia Content in Computational Grids",
Journal of Supercomputing, vol. 23, no. 1, August, 2002.
Feng, W. - C.,
"Securing Wireless Communication in Heterogeneous Environments",
IEEE Symposium on Military Communications (MILCOM 2002), Los Angeles, California, October, 2002.
Feng, W. - C., M. E. Fisk, M. K. Gardner, and E. Weigle,
"Dynamic Right-Sizing: An Automated, Lightweight, and Scalable Technique for Enhancing Grid Performance",
7th International IEEE Workshop on Protocols for High Speed Networks (PfHSN 2002), Berlin, Germany, April, 2002.
Gardner, M. K., W. - C. Feng, and M. E. Fisk,
"Dynamic Right-Sizing in FTP (drsFTP): An Automatic Technique for Enhancing Grid Performance",
IEEE Symposium on High-Performance Distributed Computing. (HPDC-2002), Edinburgh, Scotland, July, 2002.
Gardner, M. K., W. - C. Feng, and J. R. Hay,
"Monitoring Protocol Traffic with a MAGNeT",
Passive & Active Measurement Workshop (PAM2002), Fort Collins, Colorado, March, 2002.
Petrini, F., W. - C. Feng, A. Hoisie, S. Coll, and E. Frachtenberg,
"The Quadrics Network : High-Performance Clustering Technology",
IEEE Micro, vol. 22, no. 1, January, 2002.
Rao, N. S. V., and W. - C. Feng,
"Performance Tradeoffs of TCP Adaptation Methods",
IEEE International Conference on Networks (ICN'02), Atlanta, Georgia, August, 2002.
Vanichpun, S., and W. - C. Feng,
"On the Transient Behavior of TCP Vegas",
11th IEEE International Conference on Computer Communications and Networks (IC3N'02), Miami, Florida, October, 2002.
Warren, M., E. Weigle, and W. - C. Feng,
"High-Density Computing: A 240-Node Beowulf in One Cubic Meter",
SC 2002: High-Performance Networking and Computing Conference (SC2002), Baltimore, Maryland, November, 2002.
Weigle, E., and W. - C. Feng,
"A Comparison of TCP Automatic-Tuning Techniques for Distributed Computing",
IEEE Symposium on High-Performance Distributed Computing (HPDC'02), Edinburgh, Scotland, July, 2002.
Weigle, E., and W. - C. Feng,
"TICKETing High-Speed Traffic with Commodity Hardware and Software",
Passive & Active Measurement Workshop (PAM2002), Fort Collins, Colorado, March, 2002.
Nikolopoulos, D. S., E. Ayguadé, and C. D. Polychronopoulos,
"Runtime vs. Manual Data Distribution for Architecture-Agnostic Shared-Memory Programming Models",
International Journal of Parallel Programming, vol. 30, no. 4: Springer, pp. 225-254, August, 2002.
Ram., D. L. Silva, and S. Varadarajan,
"Assessment of Voice over IP as a Solution for Voice over ADSL",
IEEE Globecom, Taiwan, November , 2002.
Prabhakar, S., C. J. Ribbens, and P. Bora,
"Multifaceted web services: an approach to secure and scalable grid scheduling",
The Web and the GRID: from e-science to e-business, Proceedings of Euroweb 2002, Swindon, UK, B. Matthews, B. Hopgood, M. Wilson (eds.) British Computer Society, pp. 116–125, 2002.
2001
Hsieh, W. C., D. R. Engler, and G. Back,
Reverse-Engineering Instruction Encodings,
, Boston, {MA}, pp. 133–146, jun, 2001.
Sun, X. - H., K. W. Cameron, D. He, and Y. Luo,
"Adaptive Multivariate Regression for Advanced Memory System Evaluation",
Journal of Performance Evaluation, vol. 45, no. 1, May, 2001.
Solihin, Y., K. W. Cameron, Y. Luo, D. Lavenier, and M. Gokhale,
"Mutable Functional Units and Their Applications on Microprocessors",
Proceedings of the International Conference on Computer Design 2001 (ICCD 2001), pp. 234-239, September, 2001.
Feng, W. - C., J. R. Hay, and M. K. Gardner,
"MAGNeT: Monitor for Application-Generated Network Traffic",
10th International Conference on Computer Communication and Networking (ICCCN'01), Scottsdale, Arizona, October, 2001.
Feng, A. C., W. - C. Feng, and G. G. Belford,
"Packet Spacing: An Enabling Mechanism for the Delivery of Multimedia Content in Computational Grids",
2nd Los Alamos Computer Science Institute Symposium (LACSI 2001), Santa Fe, New Mexico, October, 2001.
Fisk, M. E., and W. - C. Feng,
"Dynamic Right-Sizing in TCP",
2nd Annual Los Alamos Computer Science Institute Symposium (LACSI 2001), Santa Fe, New Mexico, October, 2001.
Fisk, M. E., and W. - C. Feng,
"Dynamic Right-Sizing: TCP Flow-Control Adaptation",
SC 2001: High-Performance Networking and Computing Conference (SC 2001), Denver, Colorado, November, 2001.
Frachtenberg, E., F. Petrini, S. Coll, and W. - C. Feng,
"Gang Scheduling with Lightweight User-Level Communication",
Workshop on Scheduling and Resource Management for Cluster Computing (in conjunction with the ICPP01) (SRMCC 2001), Valencia, Spain, September, 2001.
Hay, J. R., W. - C. Feng, and M. K. Gardner,
"Capturing Network Traffic with a MAGNeT",
5th Annual Linux Showcase and Conference (ALS'01), Oakland, California, November, 2001.
Kapadia, A. C., A. C. Feng, and W. - C. Feng,
"The Effects of Inter-Packet Spacing on the Delivery of Multimedia Content",
21st International Conference on Distributed Computing Systems (ICDCS'01), Scottsdale, Arizona, April, 2001.
Al-Muhtadi, J., W. - C. Feng, and M. E. Fisk,
"An Inter-Realm, Cyber-Security Infrastructure for Virtual Supercomputing",
2nd Annual Los Alamos Computer Science Institute Symposium. (LACSI 2001), Santa Fe, New Mexico, October, 2001.
Petrini, F., A. Hoisie, W. - C. Feng, and R. Graham,
"Performance Evaluation of the Quadrics Interconnection Network",
IEEE Workshop on Communication Architectures for Clusters (CAC'01), held in conjunction with IPDPS 2001, San Francisco, California, April, 2001.
Petrini, F., W. - C. Feng, A. Hoisie, S. Coll, and E. Frachtenberg,
"The Quadrics Network (QsNet): High-Performance Clustering Technology",
9th IEEE Hot Interconnects. (HotI'01), Palo Alto, California, August, 2001.
Weigle, E., and W. - C. Feng,
"A Case for TCP Vegas in High-Performance Computational Grids",
9th IEEE International Symposium on High-Performance Distributed Computing (HPDC'01), San Francisco, California, August, 2001.
Weigle, E., and W. - C. Feng,
"Dynamic Right-Sizing: A Simulation Study",
10th International Conference on Computer Communication and Networking (ICCCN 2001), Scottsdale, Arizona, October, 2001.
Weigle, E., W. - C. Feng, and M. K. Gardner,
"Why TCP Will Not Scale for the Next-Generation Internet",
11th IEEE Workshop on Local and Metropolitan Area Networks. (LANMAN 2001), Boulder, Colorado, March, 2001.
Curtis-Maury, M., J. Dzierwa, C. D. Antonopoulos, and D. S. Nikolopoulos,
"On the Design of Online Predictors for Autonomic Power-Performance Adaptation of Multithreaded Programs",
Journal of Autonomic and Trusted Computing: American Scientific Publishers, 2001.
Varadarajan, S.,
"Experiences with EtheReal: A Fault-Tolerant Real- Time Ethernet Switch",
Proceedings of the IEEE Conference on Emerging Technologies and Factory Automation, Nice France, October, 2001.
Doswell, F., M. Abrams, and S. Varadarajan,
"The Effectiveness of Cache Coherence Implemented on the Web",
ACM International Conference on Supercomputing 2001, Sorrento, Italy, 2001.
Farkas, D., M. Duranduru, W. A. Curtin, and C. J. Ribbens,
"Multiple-dislocation emission from the crack tip in the ductile fracture of Al",
Philosophical Magazine A, vol. 81, pp. 1241–1255, 2001.
Kohn, S., G. Kumfert, J. Painter, and C. J. Ribbens,
"Divorcing language dependencies from a scientific software library",
Proceedings of the Tenth SIAM Conference on Parallel Processing for Scientific Computing, Philadelphia, PA, C. Koelbel and J. Meza (eds.), SIAM, 2001.
2000
Shaffer, C. A., L. T. Watson, D. G. Kafura, N. Ramakrishnan, and A. Tentner,
"Features of Problem Solving Environments for Computational Science",
Proceedings of the 2000 High Performance Computing Symposium (HPC'00), San Diego, CA, Society for Computer Simulation International, pp. 242–247, April 2000.
Farkas, K., J. Flinn, G. Back, D. Grunwald, and J. Anderson,
"Quantifying the Energy Consumption of a Pocket Computer and a Java Virtual Machine",
Proceedings of SIGMETRICS '00, Santa Clara, CA, pp. 252–263, 2000.
Back, G., W. C. Hsieh, and J. Lepreau,
Processes in KaffeOS: Isolation, Resource Management, and Sharing in {Java},
, San Diego, CA, USENIXASSOC, pp. 333–346, 2000.
Back, G., P. Tullmann, L. Stoller, W. C. Hsieh, and J. Lepreau,
Techniques for the Design of Java Operating Systems,
, San Diego, {CA}, USENIXASSOC, pp. 197–210, jun, 2000.
Lavenier, D., K. W. Cameron, and Y. Solihin,
"Integer/Floating Point Reconfigurable ALU",
Proceedings of the 6th Symposium on New Machine Architectures (SympA'6), pp. 12 pgs, June, 2000.
Sun, X. - H., and K. W. Cameron,
"A Statistical-Empirical Hybrid Approach to Hierarchical Memory Analysis",
Proceedings of Euro-Par 2000, pp. 141-148, August, 2000.