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Parallel Genomic Sequence-Searching on an Ad-Hoc Grid: Experiences, Lessons Learned, and Implications

Feng, W. - C., "Parallel Genomic Sequence-Searching on an Ad-Hoc Grid: Experiences, Lessons Learned, and Implications", Supercomputing, 2006. SC '06. Proceedings of the ACM/IEEE SC 2006 Conference, pp. 22-22, 11.

Identification of common molecular subsequences

Smith, T., and M. Waterman, "Identification of common molecular subsequences", Journal of molecular biology, vol. 147, pp. 195–197, 1981.

{Performance and Scalability Analysis of Teraflop-scale Parallel Architectures using Multidimensional Wavefront Applications}

Hoisie, A., O. Lubeck, and H. Wasserman, {Performance and Scalability Analysis of Teraflop-scale Parallel Architectures using Multidimensional Wavefront Applications}, , no. {LAUR-98-3: Los Alamos National Laboratory, 1998.

Cell Broadband Engine Architecture and its first implementation.

Chen, T., R. Raghavan, J. Dale, and E. Iwata, "Cell Broadband Engine Architecture and its first implementation.", IBM developerWorks, Nov, 2005.

RAxML-CELL: Parallel Phylogenetic Tree Construction on the Cell Broadband Engine

Blagojevic, F., A. Stamatakis, C. Antonopoulos, and D. S. Nikolopoulos, "RAxML-CELL: Parallel Phylogenetic Tree Construction on the Cell Broadband Engine", Proceedings of the 21st IEEE/ACM International Parallel and Distributed Processing Symposium, 2007.

{Introduction to the Cell multiprocessor}

et al., K. J. A., "{Introduction to the Cell multiprocessor}", {IBM Journal of Research and Development}, pp. 589-604, Jul-Sep, 2005.

{The Potential of the Cell Broadband Engine for Data Mining}

Buehrer, G., and S. Parthasarathy, {The Potential of the Cell Broadband Engine for Data Mining}, , no. TR-2007-22: Department of Computer Science and Engineering, Ohio State University, 2007.

{Vectorized Data Processing on the Cell Broadband Engine}

Heman, S., N. Nes, M. Zukowski, and P. Boncz, "{Vectorized Data Processing on the Cell Broadband Engine}", Proc.\ of the Third International Workshop on Data Management on New Hardware, jun, 2007.

CellSort: High Performance Sorting on the Cell Processor

Gedik, B., R. Bordawekar, and P. S. Yu, "CellSort: High Performance Sorting on the Cell Processor", Proc.\ of the 33rd Very Large Databases Conference, pp. 1286-1207, 2007.

Exploring the Viability of the Cell Broadband Engine for Bioinformatics Applications

Sachdeva, V., M. Kistler, W. E. Speight, and T. - H. K. Tzeng, "Exploring the Viability of the Cell Broadband Engine for Bioinformatics Applications", Proc.\ of the 6th IEEE International Workshop on High Performance Computational Biology, 2007.