2008
Panning T.D., Watson L.T., Allen N.A., Chen K.C., Shaffer C.A., Tyson J.J.,
"Deterministic parallel global parameter estimation for a model of the budding yeast cell cycle",
J. of Global Optimization, vol. 40, no. 4, Hingham, MA, USA, Kluwer Academic Publishers, pp. 719–738, 2008.
Tagged BibTex xml
Pati A., Jin Y., Klage K., Helm R., Heath L.S., Ramakrishnan N.,
"CMGSDB: Integrating Heterogeneous Caenorhabditis elegans Data Sources Using Compositional Data Mining",
Nucleic Acids Research, vol. 36, pp. D69-76, 2008.
Tagged BibTex xml
Cao Y., Petzold L.,
"Slow Scale Tau-leaping Method",
Computer Methods in Applied Mechanics and Engineering, 2008.
Tagged BibTex xml
Shu* J., Watson L T., Ramakrishnan N., Kamke F A., North C.,
"Unification of problem solving environment implementation layers with XML-based specifications",
Advances in Engineering Software, vol. 39, no. 3, pp. 189-201, March, 2008.
Tagged BibTex xml
Carmichael G R., Chai T., Sandu A., Constantinescu E M., Daescu D.,
"Predicting air quality: improvements through advanced methods to integrate models and measurements",
Journal of Computational Physics, vol. 227, no. 7, pp. 3540–3571, 2008.
Tagged BibTex xml
Giraud L., Haidar A., Watson L T.,
"Mixed-precision preconditioners in parallel domain decomposition solvers",
Lecture Notes in Computational Science and Engineering: Domain Decomposition Methods in Science and Engineering XVII: U. Langer, M. Discacciati, D. Keyes, O. Widlund, and W. Zulehner (eds.), Springer, Berlin, 2008.
Tagged BibTex xml
Halloran M E., Ferguson N M., Eubank S., Jr. L.I M., Cummings D A T., Lewis B., Xu S., Fraser C., Vullikanti A., Germann T C., Wagener D., Beckman R., Kadau K., Barrett C., Macken C A., Burke D S., Cooley P.,
"Modeling targeted layered containment of an influenza pandemic in the United States.",
Proceedings of the National Academy of Sciences (PNAS), March, 2008.
Tagged BibTex xml
Choi Y., Khan M., Kumar A.V S., Pandurangan G.,
"Work-Efficient Distributed Euclidean Minimum Spanning Tree,",
20th ACM Symposium on Parallelism in Algorithms and Architectures (SPAA), Munich, Germany, June , 2008.
Tagged BibTex xml
Atkins K., Barrett C., Beckman R., Bisset K., Chen J., Eubank S., Feng A., Feng X., Harris S., Lewis B., Kumar A.V S., Marathe M., Marathe A., Mortveit H., Stretz P.,
An Interaction Based Composable Architecture for Building Scalable Models of Large Social, Biological, Information and Technical Systems,
, CT Watch, vol. 4, pp. 46-53, 2008.
Tagged BibTex xml
Barrett C., Bisset K., Konjevod G., Holzer M., Marathe M., Wagner D.,
"Engineering Label-Constrained Shortest-Path Algorithms,",
Proc. 4th International Conference on Algorithmic Aspects in Information and Management (AAIM 2008 ), June, 2008.
Tagged BibTex xml
Barrett C., Eubank S., Lewis B., Marathe M.,
"Information Systems for Detection and Management of Pandemics",
Encyclopedia of Geographic Information Systems, S. Shekhar, X. Xiong, Eds. : Springer-Verlag, 2008.
Tagged BibTex xml
2007
Mishra D., Shaffer C.A., Ramakrishnan N., Watson L.T., Bae K.K., He J., Verstak A.A., Tranter W.H.,
"S4W: a problem-solving environment for wireless system design",
Softw. Pract. Exper., vol. 37, no. 14, New York, NY, USA, John Wiley & Sons, Inc., pp. 1539–1558, 2007.
Tagged BibTex xml
Choi V.,
"Faster Algorithms for Constructing Galois Lattice",
DIMACS book on Clustering Challenges in Biological Networks, 2007.
Tagged BibTex xml
Cao Y., Liu Z.,
"The detailed comparison between StochSim and SSA",
The first q-bio conference on cellular information processing, Santa Fe, New Mexico, August, 2007.
Tagged BibTex xml
Cao Y.,
"The adaptive explicit-implicit tau-leap method",
SCICADE (International Conference on SCIentic Computation And Dierential Equations), Santa Malo, France, July, 2007.
Tagged BibTex xml
Heath L.S., Sioson A.A.,
"Multimodal Networks: Structure and Operations",
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2007.
Tagged BibTex xml
Heath L.S., Sioson A.A.,
"Semantics of Multimodal Network Models,",
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2007.
Tagged BibTex xml
Heath L.S., Pati A.,
"Predicting Markov Chain Order in Genomic Sequences",
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine (BIBM): IEEE Computer Society Press, 2007.
Tagged BibTex xml
Heath L.S., Pati A.,
"Genomic Signatures in de Bruijn Chains",
Proceedings of the Workshop on Algorithms in Bioinformatics (WABI), vol. 4645, pp. pp. 216-227. , 2007.
Tagged BibTex xml
Heath L.S., Pati A.,
"Genomic Signatures from DNA Word Graphs",
Proceedings of the Third International Symposium on Bioinformatics Research and Applications, ISBRA , vol. 4463, pp. pp. 317-328., 2007.
Tagged BibTex xml
Hakami A., Henze D K., Seinfeld J H., Singh K., Sandu A., Kim S., Byun D., Li Q.,
"The adjoint of CMAQ",
Environmental Science and Technology, vol. 41, no. 22, pp. 7807–7817, 2007.
Tagged BibTex xml
Constantinescu E M., Sandu A., Chai T., Carmichael G R.,
"Ensemble-based chemical data assimilation. I: General approach",
Quarterly Journal of the Royal Meteorological Society, vol. 133, no. 626, pp. 1229–1243, July, 2007.
Tagged BibTex xml
Constantinescu E M., Sandu A., Chai T., Carmichael G R.,
"Ensemble-based chemical data assimilation. II: Covariance localization",
Quarterly Journal of the Royal Meteorological Society, vol. 133, no. 626, pp. 1245–1256, July, 2007.
Tagged BibTex xml
Chai T., Carmichael G R., Tang Y., Sandu A., Hardesty M., Pilewskie P., Whitlow S., Browell E V., Avery M A., Thouret V., Nedelec P., Merrill J T., and Thomson A M.,
"Four dimensional data assimilation experiments with ICARTT (International Consortium for Atmospheric Transport and Transformation) ozone measurements",
Journal of Geophysical Research, vol. 112, no. D12S15, 2007.
Tagged BibTex xml
Iyer M A., Watson L T., Birch J B.,
"pRIPPLE: a parallel version of a polynomial-time piecewise linear estimation algorithm",
Proc. 2007 Spring Simulation Multiconf., Business and Industry Symp., Vol. II, M. J. Ades, M. J. Chinni, J. A. Hamilton, Jr., J. M. D. Hill, H. Rajaei, and C.-H. Wu (eds.), Soc. for Modeling and Simulation Internat., vol. 2, San Diego, CA, pp. 99–103, 2007.
Tagged BibTex xml
Phillips R D., Watson L T., Wynne R H.,
"A shared memory parallel algorithm for hybrid image classificatio",
Proc. 2007 Spring Simulation Multiconf., High Performance Computing Symp., M. J. Ades, M. J. Chinni, J. Nutaro, T. ¨Oren, H. Rajaei, and L. Watson (eds), Soc. for Modeling and Simulation Internat., vol. 1, pp. 405–411, 2007.
Tagged BibTex xml
Phillips R D., Watson L T., Wynne R H., Blinn C E.,
"Data reduction using the singular value decomposition for a hybrid classifier",
Proc. 2007 Internat. Conf. on Scientific Computing: H. R. Arabnia, J. Y. Yang, and M. Q. Yang (eds.), CSREA Press, USA, pp. 183–188, 2007.
Tagged BibTex xml
Zhang J., Watson L T.,
"A modified uniformization method for the chemical master equation",
Proc. 7th IEEE Internat. Conf. on Bioinformatics and Bioengineering, Boston, MA, pp. 1429–1433, 2007.
Tagged BibTex xml
Barrett C., Bisset K., Chen J., Eubank S., Lewis B., Kumar A.V S., Marathe M., Mortveit H.,
"Effect of Public Policies and Individual Behavior on the Co-evolution of Social Networks and Infectious Disease Dynamics",
DIMACS Workshop on Computational Methods for Dynamic Interaction Networks, Rutgers University, Septermber, 2007.
Tagged BibTex xml
Barrett C., Lewis B., Chen J., Kumar A.V S., Eubank S., Marathe M., Mortveit H.,
"Interactions among human behavior, social networks, and societal infrastructures: A case study in computational epidemiology.",
Ravi S, Shukla S (eds.), Fundamental Problems in Computing: Essays in Honor of Professor Daniel J. Rosenkrantz. Springer Verlag, Vol. In press December, 2007.
Tagged BibTex xml
Barrett C., Bisset K., Eubank S., Kumar A.V S., Marathe M V., Mortveit H.,
"Modeling and Simulation of Large Biological, Information and Socio-Technical Systems: An Interaction-Based Approach",
Proceedings of the Short Course on Modeling and Simulation of Biological Networks, AMS Lecture Notes, Series: PSAPM, revised and accepted, January 2007. In Press., 2007.
Tagged BibTex xml
Barrett C L., III H.H B., Marathe M V., Ravi S S., Rosenkrantz D J., Stearns R E., Thakur M.,
"Predecessor Existence Problems for Finite Discrete Dynamical Systems",
Theoretical Computer Science, vol. 386, no. 1-2, pp. 3-37, 2007.
Tagged BibTex xml
Barrett C., Bisset K., Chen J., Lewis B., Eubank S., Kumar A.V S., Marathe M., Mortveit H.,
"Effect of Public Policies and Individual Behavior on the Co-evolution of Social Networks and Infectious Disease Dynamics ",
Proc. DIMACS/DyDAn Workshop on Computational Methods for Dynamic Interaction Networks, September, 2007.
Tagged BibTex xml
Barrett C L., III H.H B., Marathe M V., Ravi S S., Rosenkrantz D J., Stearns R E., Thakur M.,
"Computational Aspects of Analyzing Social Network Dynamics",
Proc. International Joint Conference on Artificial Intelligence, (IJCAI 07), Hyderabad, India, pp. 2268-2273, January, 2007.
Tagged BibTex xml
Barrett C L., Chen J., Eubank S., Lewis B., Kumar V S A., Marathe M V., Mortveit H S.,
"Interactions Among Individual Behavior, Social Networks, and Societal Infrastructures: A Case Study in Computational Epidemiology ",
Book Containing Chapters to celebrate Prof. Daniel Rosenkrantz's 60th Birthday: Springer, 2007.
Tagged BibTex xml
Barrett C L., Chen J., Eubank S., Lewis B., Kumar V S A., Marathe M V., Mortveit H S.,
"Interactions Among Individual Behavior, Social Networks, and Societal Infrastructures: A Case Study in Computational Epidemiology ",
Book Containing Chapters to celebrate Prof. Daniel Rosenkrantz's 60th Birthday: Springer, 2007.
Tagged BibTex xml
Barrett C L., Bisset K., Eubank S., Kumar V S A., Marathe M V., Mortveit H S.,
"Modeling and Simulation of Large Biological, Information and Socio-Technical Systems: An Interaction-Based Approach ",
Proceedings of the Symposia in Applied Mathematics, Short Course on Modeling and Simulation of Biological Networks, AMS Lecture Notes, Series, (PSAPM) 64, pp. 101-147, 2007.
Tagged BibTex xml
2006
Vass M.T., Shaffer C.A., Ramakrishnan N., Watson L.T., Tyson J.J.,
"The JigCell Model Builder: A Spreadsheet Interface for Creating Biochemical Reaction Network Models",
IEEE/ACM Trans. Comput. Biol. Bioinformatics, vol. 3, no. 2, Los Alamitos, CA, USA, IEEE Computer Society Press, pp. 155–164, 2006.
Tagged BibTex xml
Li P., Sioson A., Mane S P., Ulanov A., Grothaus G., Heath L S., Murali T M., Bohnert H J., Grene R.,
"Response diversity of Arabidopsis thaliana ecotypes in elevated CO/2 in the field.",
Plant Mol Biol, vol. 62, no. 4-5, pp. 593-609, 2006.
Abstract
Tagged BibTex xml
Pati A., Vasquez-Robinet C., Heath L S., Grene R., Murali T M.,
"XcisClique: Analysis of regulatory bicliques.",
BMC Bioinformatics, vol. 7, no. 1, pp. 218, 2006.
Abstract
Tagged BibTex xml
Choi V.,
"On Updating Torsion Angles of Molecular Conformations",
Journal of Chemical Information and Modeling, vol. 46, no. 1, pp. pp438 – 444, 2006.
Tagged BibTex xml
Cao Y., Petzold L., Gillespie D.,
"Adaptive tau-leaping method for biochemical systems",
minisymposium talk in SIAM Annual Meeting 2006, Boston, Massachusetts, July, 2006.
Tagged BibTex xml
Watkinson J.I., Hendricks L., Sioson A.A., Vasquez-Robinet C., Heath L.S., Schuler M., Bohnert H.J.,
"Accessions of Solanum tuberosum ssp. andigena Show Differences in Photosynthetic Recovery After Drought Stress as Reflected in Gene Expression Profiles",
Plant Science , vol. 171, pp. pp. 745-758. , 2006.
Tagged BibTex xml
Li P H., Mane S P., Sioson A A., Robinet C V., Heath L S., Bohnert H J., Grene R.,
"Effects of Chronic Ozone Exposure on Gene Expression in Arabidopsis thaliana Ecotypes and in Thellungielia halophila",
Plant Cell and Environment , vol. 29, pp. pp. 854-868. , 2006.
Tagged BibTex xml
Li P H., Sioson A., Mane S P., Ulanov A., Grothaus G., Heath L S., Murali T M., Bohnert H J., Grene R.,
"Response Diversity of Arabidopsis thaliana Ecotypes in Elevated [Co2] in the Field",
Plant Molecular Biology, vol. 62, pp. pp. 593-609, 2006.
Tagged BibTex xml
Sioson A.A., Mane S.P., Li P., Sha W., Heath L.S., Bohnert H.J., Grene R.,
"The Statistics of Identifying Differentially Expressed Genes in Expresso and TM4: A Comparison",
BMC Bioinformatics , vol. 7, pp. 15 pages in main article; plus 5 pages in 2 additional files. , 2006.
Tagged BibTex xml
Pati A., Vasquez-Robinet C., Heath L.S., Grene R., Murali T M.,
"XcisClique: Analysis of Regulatory Bicliques",
BMC Bioinformatics, vol. 7, pp. 14 pages in main article; plus 16 pages in 7 additional files, 2006.
Tagged BibTex xml
Sandu A.,
"On the Properties of Runge-Kutta Discrete Adjoints",
Lecture Notes in Computer Science, vol. LNCS 3994,: "International Conference on Computational Science", pp. 550–557, 2006.
Tagged BibTex xml
Sandu C., Sandu A., and Li L.,
"Modeling of stochastic terrain profiles and soil parameters",
SAE 2005 Transactions – Journal of Commercial Vehicles, vol. 114, no. 2, pp. 211–220, 2006.
Tagged BibTex xml
Goel T., Haftka R T., Shyy W., Watson L T.,
"Pointwise RMS bias error estimates for design of experiments",
Proc. 44th AIAA Aerospace Sciences Meeting & Exhibit, AIAA Paper 2006-0724, Reno, NV, pp. 22 pages, 2006.
Tagged BibTex xml
Iyer M A., Watson L T.,
"An interpolation method for high dimensional scattered data",
Proc. 2006 Spring Simulation Multiconf., Business and Industry Symp., J. A. Hamilton, Jr., R. MacDonald, and M. J. Chinni (eds.), Soc. for Modeling and Simulation Internat., San Diego, CA, pp. 217–222, 2006.
Tagged BibTex xml
He J., Verstak A., Watson L T., Sosonkina M.,
"Performance studies of a parallel global search algorithm on System X",
Proc. 2006 Spring Simulation Multiconf., High Performance Computing Symp., J. A. Hamilton, Jr., R. MacDonald, and M. J. Chinni (eds.), Soc. for Modeling and Simulation Internat, San Diego, CA, 209–214, 2006.
Tagged BibTex xml
Watson L T., Trosset M W., Kugele S C.,
"Statistical decision-theoretic methods for robust design optimization",
Proc. 2006 NSF Design, Service, and Manufacturing Grantees and Research Conf., CD-ROM, St. Louis, MO, pp. 13 pages, 2006.
Tagged BibTex xml
Goel T., Haftka R T., Shyy W., Watson L T.,
"Combining bias and variance based criteria for selecting experimental designs",
Proc. 2006 NSF Design, Service, and Manufacturing Grantees and Research Conf., CD-ROM, St. Louis, MO, pp. 16 pages, 2006.
Tagged BibTex xml
Kumar A.V S., Marathe M., Parthasarathy S., Srinivasan A., Zust S.,
"Provable Algorithms for Parallel Generalized Sweep Scheduling",
Journal of Parallel and Distributed Computing (JPDC), vol. 66, no. 6, pp. 807-821, 2006.
Tagged BibTex xml
Barrett C L., III H.H B., Marathe M V., Ravi S S., Rosenkrantz D J., Stearns R E.,
"Dichotomy Results for Reachability Problems in Sequential Dynamical Systems",
J. Computer and System Science , vol. 72, no. 8, pp. 1317-1345, 2006.
Tagged BibTex xml
Barrett C L., III H.H B., Marathe M V., Ravi S S., Rosenkrantz D J., Stearns R E., Thakur M.,
"Computational Complexity of Analyzing the Dynamic Reliability of Interdependent Infrastructures ",
Proc. 3rd International Conference on Critical Infrastructures (CRIS06) , August, 2006.
Tagged BibTex xml
Kumar A.V S., Marathe M., Sundaram M., Thulasidasan S.,
"Scaling Laws for the Internet over Urban Regions, ",
CAIDA (Cooperative Association for Internet Data Analysis), ISMA 2006 WIT: Workshop on the Internet Topology , 2006.
Tagged BibTex xml
Istrate G., Hansson A., Marathe M., Thulasidasan S., Barrett C.,
"Semantic compression of TCP traces, ",
Proceedings of the IFIP NETWORKING Conference, F. Boavida et al. (editors), pp. 123-135, 2006.
Tagged BibTex xml
Barrett C., Istrate G., Kumar A.V S., Marathe M., Thite S., Thulasidasan S.,
"Strong Edge Coloring for Channel Assignment in Wireless Radio Networks",
Proceedings of the First IEEE International Workshop on Foundations and Algorithms for Wireless Networking (FAWN'06) , pp. 106-110, 2006.
Tagged BibTex xml
2005
Cao Y., Hall A., H L., Petzold L.,
"StochKit, a new stochastic simulation toolkit",
Sixth International Conference on Systems Biology, Boston, Massachusetts, October, 2005.
Tagged BibTex xml
Cao Y., Petzold L.,
"Trapezoidal tau-lepaing formula for the stochastic simulation of biochemical systems",
Proceedings of Foundations of Systems Biology in Engineering (FOSBE 2005), pp. pp 149- 152, August, 2005.
Tagged BibTex xml
Brueni D.J., Heath L.S.,
"The PMU Placement Problem",
SIAM Journal on Discrete Mathematics, vol. 19, pp. pp. 744-761. , 2005.
Tagged BibTex xml
John C. Gordon, Myers J.B., Folta T., Shoja V., Heath L.S., Onufriev A.,
"H++: A Server for Estimating pK(a)s and Adding Missing Hydrogens to Macromolecules",
Nucleic Acids Research , vol. 33, no. 2, pp. pp. W368-W371, 2005.
Tagged BibTex xml
Mane S., Vasquez-Robinet C., Sioson A.A., Heath L.S., Grene R.,
"Effects of Drought Stress on Phospholipid Signaling in Arabidopsis (Poster)",
InterDrought-II, The Second International Conference on Integrated Approaches to Sustain and Improve Plant Production Under Drought Stress, Rome, Italy, 09/2005.
Tagged BibTex xml
Pati A., Vasquez-Robinet C., Heath L.S., Grene R., Murali. T M.,
"XcisClique: Analyzing Regulatory Bicliques in Arabidopsis thaliana (Poster)",
8th Annual Conference on Computational Genomics , Cambridge, MA,, 11/2005.
Tagged BibTex xml
Sandu A., M. Constantinescu E., Liao W., R. Carmichael G., Chai T., H. Seinfeld J., Daescu D.,
"Ensemble Filter Data Assimilation for Atmospheric Chemical and Transport Models",
International Conference on Computational Science (ICCS05): International Conference on Computational Science, pp. 648–656, 2005.
Tagged BibTex xml
Constantinescu E M., Liao W., Sandu A.,
"Mesh Refinement Strategies in Air Quality Modeling",
High Performance Computing Symposium (HPC 2005): High Performance Computing Symposium, pp. 158–163, 2005.
Tagged BibTex xml
Constantinescu E M., Sandu A.,
"On Adaptive Mesh Refinement for Atmospheric Pollution Models",
Lecture Notes in Computer Science, vol. 3515: "International Conference on Computational Science", pp. 798–806, 2005.
Tagged BibTex xml
Hakami A., Henze D K., Seinfeld J H., Chai T., Tang Y., Carmichael G R., Sandu A.,
"Adjoint inverse modeling of black carbon during ACE-Asia",
Journal of Geophysical Research, vol. 110, no. D14, 2005.
Tagged BibTex xml
Hosder S., Grossman B., Haftka R T., Mason W H., Watson L T.,
"Observations on CFD simulation uncertainties",
Proc. 9th AIAA/ISSMO Symp. on Multidisciplinary Analysis and Optimization, CD-ROM, Atlanta, GA, pp. 18 pages, 2005.
Tagged BibTex xml
Adams D B., Watson L T., Seresta O., Gurdal Z.,
"Global/local iteration for blended composite laminate panel structure optimization subproblems",
Proc. High Performance Computing Symposium 2005, M. Parashar and L. Watson (eds.) Soc. for Modeling and Simulation Internat., San Diego, CA, pp. 151-157, 2005.
Tagged BibTex xml
He J., Sosonkina M., Watson L T., Verstak A., Zwolak J W.,
"Data-distributed parallelism with dynamic task allocation for a global search algorithm",
Proc. High Performance Computing Symposium 2005, M. Parashar and L. Watson (eds.), Soc. for Modeling and Simulation Internat.: San Diego, CA, pp. 164–172, 2005.
Tagged BibTex xml
Barkhi R., James T., Watson L.,
"Problem characteristics determining the appropriateness of genetic algorithm approaches",
Proc. Business and Industry Symposium 2005, M. J. Ades and T. Hang (eds.), Soc. for Modeling and Simulation Internat., San Diego, CA, pp. 135–139, 2005.
Tagged BibTex xml
Barrett C., Drozda M., Engelhart D., Kumar A.V S., Marathe M., Morin M., Ravi S S., Smith J P.,
"Understanding Protocol Performance and Robustness of Ad hoc Networks Through Structural Analysis",
Proc. International Conference onWireless and Mobile Computing, Networking and Communications (WiMob 2005), 2005.
Tagged BibTex xml
Barrett C., Eidenbenz S., Kroc L., Marathe M., Smith J.,
"Parametric Probabilistic Routing in Sensor Networks",
ACM/Baltzer J. Mobile Networks and Applications (MONET), vol. 10, no. 4, pp. 529-544, 2005.
Tagged BibTex xml
Barrett C., Morin M., Engelhart C., Marathe M., Smith J., Drozda M., Kumar A.V.,
"Understanding Protocol Performance and Robustness of Ad-Hoc Networks Through Structural Analysis ",
Proc. IEEE International Conference on Wireless and Mobile Computing, Networking and Communications (WiMob) , 2005.
Tagged BibTex xml
III H.H B., Marathe M V., Stearns R E., Rosenkrantz D J.,
"A Survey of Periodically Specified Problems",
Computational Complexity and Statistical Physics , Oxford University Press, Santa Fe Institute Lectures in the Sciences of Complexity , G. Istrate, C. Moore, A. Percus Eds, pp. 285-318, 2005.
Tagged BibTex xml
2004
Vass M., Allen N., Shaffer C.A., Ramakrishnan N., Watson L.T., Tyson J.J.,
"The JigCell Model Builder and Run Manager",
Bioinformatics, vol. 20, no. 18, Oxford, UK, Oxford University Press, pp. 3680–3681, 2004.
Tagged BibTex xml
Skidmore R.R., Verstak A., Ramakrishnan N., Rappaport T.S., Watson L.T., He J., Varadarajan S., Shaffer C.A., Chen J., Bae K., Jiang J., Tranter W.H.,
"Towards integrated PSEs for wireless communications: experiences with the S4W and SitePlanner\textregistered projects",
SIGMOBILE Mob. Comput. Commun. Rev., vol. 8, no. 2, New York, NY, USA, ACM, pp. 20–34, 2004.
Tagged BibTex xml
Choi V., Agarwal P K., Edelsbrunner H., Rudolph J.,
"Local Search Heuristic for Rigid Protein Docking",
The 4th Workshop on Algorithms in Bioinformatics (WABI 2004), vol. 3240, pp. pp. 218–229, 2004.
Tagged BibTex xml
Choi V., Goyal N.,
"A Combinatorial Shape Matching Algorithm for Rigid Protein Docking",
The Fifteenth Annual Symposium on Combinatorial Pattern Matching (CPM 2004), vol. 3109, pp. pp 285-296, 2004.
Tagged BibTex xml
Gunawan R., Cao Y., Lampoudi S., Petzold L., III D.F.,
"Stochastic sensitivity analysis of a circadian gene network",
the 5th International Conference on Systems Biology, Heidelberg, Germany, October, 2004.
Tagged BibTex xml
Chai T., Carmichael G R., Daescu D., Sandu A.,
"Analysis of Trace-P observations using a 4D-Var data assimilation technique",
{Proceedings of the 84-th American Meteorological Society annual meeting}, vol. Session 8:, no. 8.4, pp. 6, January 11-15, 2004.
Tagged BibTex xml
Carmichael G R., Sandu A., Daescu D., Chai T., Seinfeld J H., Hess P., Anderson T.,
"Chemical data assimilation in support of air quality forecasting",
Proceedings of the 84-th American Meteorological Society annual meeting, vol. Session 2:, no. 2.1, pp. 6, January 11-15, 2004.
Tagged BibTex xml
Sandu A., Liao W., Carmichael G R., Henze D., Seinfeld J H., Chai T., Daescu D.,
"Computational aspects of data assimilation for aerosol dynamics",
Lecture Notes in Computer Science, vol. 3038: Springer-Verlag GmbH, pp. 709–716, June, 2004.
Tagged BibTex xml
Tang Y., Carmichael G R., Horowitz L W., Uno I., Woo J H., Streets D G., Dabdub D., Kurata G., Sandu A., Allan J., Atlas E., Flocke F., Huey L G., Jakoubek R O., Millet D B., Parrish D D., Quinn P K., Roberts J M., Ryerson T B., Williams E., Nowak J B., Worsnop D., Goldstein A., Donnelly S., Schauffler S., Stroud V., Johnson K., Avery M A., Singh H B., Apel E C.,
"Multi-scale simulations of tropospheric chemistry in the Eastern Pacific and U.S. West coast during spring 2002",
Journal of Geophysical Research - Atmospheres, vol. 109, no. D23, 2004.
Tagged BibTex xml
Tang Y., Carmichael G R., Seinfeld J H., Dabdub D., Weber R J., Huebert B., Clarke A D., Guazzotti S A., Sodeman D A., Prather K A., Uno I., Woo J H., Streets D G., Quinn P K., Johnson J E., Song C H., Sandu A., Talbot R W., Dibb J E.,
"Three-dimensional studies of aerosol ions and their size distribution in East Asia during spring 2001",
Journal of Geophysical Research, vol. 109, no. D19, 2004.
Tagged BibTex xml
Goncalves M A., Fox E A., Watson L T., Kipp N A.,
"Streams, structures, spaces, scenarios, societies (5S): a formal model for digital libraries",
ACM Trans. Infor. Systems, vol. 22, pp. 270–312, 2004.
Tagged BibTex xml
Goncalves M A., Fox E A., Watson L T., Kipp N A.,
"Streams, structures, spaces, scenarios, societies (5S): a formal model for digital libraries",
ACM Trans. Infor. Systems, vol. 22, pp. 270–312, 2004.
Tagged BibTex xml
Schutte J., Haftka R T., Watson L T.,
"Decomposition and two-level optimization of structures with discrete sizing variables",
AIAA Paper 2004–1541, in Proc. AIAA/ASME/- ASCE/AHS/ASC 45th Structures, Structural Dynamics, and Materials Conf., CD-ROM, Palm Springs, CA, pp. 5 pages, 2004.
Tagged BibTex xml
Agarwal H., Lee J C., Watson L T., Renaud J E.,
"A unilevel method for reliability based design optimization",
Proc. AIAA/ASME/ASCE/AHS/ASC 45th Structures, Structural Dynamics, and Materials Conf., CD-ROM, Palm Springs, CA, pp. 19 pages, 2004.
Tagged BibTex xml
Setoodeh S., Gurdal Z., Abdalla M., Watson L T.,
"Design of variable stiffness composite laminates for maximum bending stiffness",
AIAA Paper 2004–4528, in Proc. 10th AIAA/ISSMO Multidisciplinary Analysis and Optimization Conf., CD-ROM, Albany, NY, pp. 8 pages, 2004.
Tagged BibTex xml
Adams D B., Setoodeh S., Watson L T., Gurdal Z.,
"Pipeline implementation of cellular automata for structural design on message-passing multiprocessors",
AIAA Paper 2004–4444, in Proc. 10th AIAA/ISSMO Multidisciplinary Analysis and Optimization Conf., CD-ROM, Albany, NY, pp. 9 pages, 2004.
Tagged BibTex xml
Gantovnik V., Gurdal Z., Watson L T.,
"Linear Shepard interpolation for high dimensional piecewise smooth functions",
AIAA Paper 2004–4486, in Proc. 10th AIAA/ISSMO Multidisciplinary Analysis and Optimization Conf., CD-ROM, Albany, NY, 2004.
Tagged BibTex xml
Seresta O., Gurdal Z., Watson L T.,
"Optimal design of composite wing structure with blended laminates",
AIAA Paper 2004–4349, in Proc. 10th AIAA/ISSMO Multidisciplinary Analysis and Optimization Conf., CD-ROM, Albany, NY, pp. 13 pages, 2004.
Tagged BibTex xml
Agarwal H., Renaud J E., Perez V M., Watson L T.,
"Homotopy methods for constraint relaxation in unilevel reliability based design optimization",
AIAA Paper 2004–4402, in Proc. 10th AIAA/ISSMO Multidisciplinary Analysis and Optimization Conf., CD-ROM, Albany, NY, pp. 12 pages, 2004.
Tagged BibTex xml
Eubank S., Guclu H., Kumar A.V S., Marathe M., Srinivasan A., Toroczkai Z., Wang N.,
"Modeling disease outbreaks in realistic urban social networks",
Nature, vol. 429, pp. 180-184, 2004.
Tagged BibTex xml
Balakrishnan H., Barrett C., Kumar A.V S., Marathe M., Thite S.,
"The distance-2 matching problem and its relationship to the MAC-layer capacity of ad hoc networks",
IEEE Journal on Selected Areas in Communication, vol. 22, no. 6, pp. 1069-1079, 2004.
Tagged BibTex xml
Eubank S., Guclu H., Kumar A.V., Marathe M V., Srinivasan A., Toroczkai Z., Wang N.,
"Modelling Disease Outbreaks in Realistic Urban Social Networks",
Nature, vol. 429, pp. 180-184, 2004.
Tagged BibTex xml
Balakrishnan H., Barrett C., Kumar A., Marathe M., Thite S.,
"The Distance 2-Matching Problem and Its Relationship to the MAC Layer Capacity of Ad-hoc Wireless Networks ",
IEEE J. Selected Areas in Communications, vol. 22, no. 6, pp. 1069-1079 , 2004.
Tagged BibTex xml
2003
Verstak A., Ramakrishnan N., Watson L.T., He J., Shaffer C.A., Bae K., Jiang J., Tranter W.H., Rappaport T.S.,
"BSML: A binding schema markup language for data interchange in problem solving environments",
Sci. Program., vol. 11, no. 3, Amsterdam, The Netherlands, The Netherlands, IOS Press, pp. 199–224, 2003.
Tagged BibTex xml
Allen N., Calzone L., Chen K C., Ciliberto A., Ramakrishnan N., Shaffer C A., Sible J C., Tyson J J., Vass M., Watson L T., Zwolak J.,
"Modeling Regulatory Networks at Virginia Tech",
Omics Journal of Integrative Biology, vol. Vol. 7, no. 3, pp. pages 285–300, Fall, 2003.
Tagged BibTex xml
Cao Y., Petzold L., Gillespie D.,
"Towards the multiscale simulation of biochemical systems",
the workshop of U.S. Army Research Oce, Institute for Collaborative Biotechnologies site visit, UCSB, July, 2003.
Tagged BibTex xml
Watkinson J.I., Sioson A.A., Vasquez-Robinet C., Shukla M., Kumar D., Ellis M., Heath L.S., Ramakrishnan N., Chevone B.I., Watson L.T., van Zyl L., Egertsdotter U., Sederoff R.R., Grene R.,
"Photosynthetic Acclimation is Reflected in Specific Patterns of Gene Expression in Drought-Stressed Loblolly Pine",
Plant Physiology , vol. 133, no. 4, pp. pp. 1702-1716, 2003.
Tagged BibTex xml
Heath L.S., Vergara J.C.,
"Sorting by Short Swaps",
Journal of Computational Biology, vol. 10, no. 5, pp. pp. 775-789. , 2003.
Tagged BibTex xml
Slotta D.J., Heath L.S., Ramakrishnan N., Helm R., Potts M.,
"Clustering Mass Spectrometry Data using Order Statistics",
Proteomics, vol. 3, no. 9, pp. pp. 1687-1691. , 2003.
Tagged BibTex xml
Sioson A.A., Watkinson J.I., Vasquez-Robinet C., Ellis M., Shukla M., Kumar D., Ramakrishnan N., Heath L.S., Grene R., Chevone B.I., Kafadar K., Watson L.T.,
"Expresso and Chips: Creating a Next Generation Microarray Experiment Management Systems",
Proceedings of the Next Generation Software Workshop, 17th International Parallel and Distributed Processing Symposium (IPDPS'03),, Nice, France, IEEE Computer Society, 2003.
Tagged BibTex xml
Sandu A., Negrut D., Sandu C., Haug E J., Potra F A.,
"Rosenbrock Nystrom integrator for SSODE of mechanical systems",
Proceedings of ASME International (DETC-2003), no. VIB-48329, pp. 8, September 6-10, 2003.
Tagged BibTex xml
Sandu A., Borden C T.,
"Discretization of aerosol dynamics with B-splines",
ACM Symposium on Applied Computing (SAC-2003), pp. 189–193, March 13-18, 2003.
Tagged BibTex xml
Sandu A.,
"Computational Sciences track editorial",
{ACM Symposium on Applied Computing (SAC-2003)}, pp. 141–142, March 13-18, 2003.
Tagged BibTex xml
Sandu A., Daescu D N., Chai T., Carmichael G R., Seinfeld J H., Hess P G., Anderson T L., Darema F.,
"Computational aspects of 4D-Var chemical data assimilation in atmospheric models",
Dynamic Data Driven Applications Systems: Kluwer Academic Publishers, 2003.
Tagged BibTex xml
Sandu A., Negrut D., Haug E J., Potra F A., Sandu C.,
"A Rosenbrock-Nystrom state space implicit method for the dynamic analysis of mechanical systems: I – Theoretical development",
Journal of Multibody Dynamics, vol. 217, no. K4, pp. 263–272, 2003.
Tagged BibTex xml
Negrut D., Sandu A., Haug E J., Potra F A., Sandu C.,
"A Rosenbrock-Nystrom state space implicit method for the dynamic analysis of mechanical systems: II – The Method and numerical results",
Journal of Multibody Dynamics, vol. 217, no. K4, pp. 273–282, 2003.
Tagged BibTex xml
Dymond R., Lohani V., Kibler D., Bosch D., Rubin E J., Dietz R., Chanat J., Speir C., Shaffer C A., Ramakrishnan N., Watson L T.,
"From landscapes to waterscapes: a PSE for landuse change analysis",
Engrg. Computers, vol. 19, pp. 9–25, 2003.
Tagged BibTex xml
Perez V M., J. E. Renaud, Watson L T.,
"Homotopy curve tracking in approximate interior point optimization",
AIAA Paper 2003–1670, in Proc. AIAA/ASME/ASCE/AHS 44th Structures, Structural Dynamics, and Materials Conf., CD-ROM, Norfolk, VA, pp. 11 pages, 2003.
Tagged BibTex xml
Gantovnik V B., Gurdal Z., Watson L T., Anderson-Cook C.,
"A genetic algorithm for mixed nonlinear programming problems using separate constraint approximations",
AIAA Paper 2003–1700, in Proc. AIAA/ASME/ASCE/AHS 44th Structures, Structural Dynamics, and Materials Conf., CD-ROM, Norfolk, VA, pp. 7 pages, 2003.
Tagged BibTex xml
Zwolak J W., Tyson J J., Watson L T.,
"Finding all steady state solutions of chemical kinetic models",
Proc. High Performance Computing Symposium 2003, I. Banicescu (ed.), Soc. for Modeling and Simulation Internat., San Diego, CA, pp. 47-53, 2003.
Tagged BibTex xml
Eidenbenz S., Kumar A.V S., Zust S.,
"Equilibria in Topology control games for ad hoc networks",
proceedings of the Workshop on Discrete Algorithms and Methods for Mobile Computing and Communications and Principles of Mobile Computing (DIALPOMC), Septermber, 2003.
Tagged BibTex xml
Barrett C., Cook D., Faber V., Hicks G., Marathe A., Marathe M V., Srinivasan A., Sussmann Y., Thornquist H.,
"Statistical Analysis of Algorithms: A Case Study of Market-Clearing Mechanisms in the Power Industry ",
Journal of Graph Algorithms and Applications (JGAA) , vol. 7, no. 1, pp. 3-31, 2003.
Tagged BibTex xml
Barrett C L., III H.H B., Marathe M V., Ravi S S., Rosenkrantz D J., Stearns R E.,
"Reachability Problems for Sequential Dynamical Systems with Threshold Functions,",
Theoretical Computer Science, pp. 41-64, March, 2003.
Tagged BibTex xml
Krumke S., Liu R., Lloyd E., Marathe M., Ramanathan R., Ravi S.,
"Topology Control Problems Under Symmetric and Asymmetric Thresholds",
Proc. International Conference on Ad hoc and Wireless Networks (ADHOC-NOW'03) , Montreal, Canada, pp. 187--198, October , 2003.
Tagged BibTex xml
Barrett C., Eidenbenz S., Kroc L., Marathe M., Smith J.,
"Parametric Probabilistic Sensor Network Routing",
Proc. 2nd ACM International Workshop on Wireless Sensor Networks (WSNA'03) , San Deigo, pp. 122-131, 2003.
Tagged BibTex xml
Barrett C L., III H.H B., Marathe M V., Ravi S S., Rosenkrantz D J., Stearns R E.,
"Predecessor and Permutation Existence Problems for Sequential Dynamical Systems ",
Proc. Discrete Models for Complex Systems, Lyon, France, pp. 69-80, June , 2003.
Tagged BibTex xml
Barrett C., Bisset K., Jacob R., Konjevod G., Marathe M V.,
"Analyzing Interaction Between Network Protocols, Topology and Traffic in Wireless Radio Networks ",
Proc. European Symposium on Algorithms (ESA), Rome, September, 2003.
Tagged BibTex xml
Burch C., Carr R., Krumke S., Marathe M., Phillips C., Sundberg E.,
"A decomposition-based pseudoapproximation algorithm for network flow inhibition ",
Network Interdiction and Stochastic Integer Programming , D.L. Woodruff (ed): Kluwer Academic Press, pp. 51-68, 2003.
Tagged BibTex xml
2002
He J., Watson L.T., Ramakrishnan N., Shaffer C.A., Verstak A., Jiang J., Bae K., Tranter W.H.,
"Dynamic Data Structures for a Direct Search Algorithm",
Comput. Optim. Appl., vol. 23, no. 1, Norwell, MA, USA, Kluwer Academic Publishers, pp. 5–25, 2002.
Tagged BibTex xml
Watson L T., Lohani V K., Kibler D F., Dymond R L., Ramakrishnan N., Shaffer C A.,
"Integrated Computing Environments for Watershed Management",
ASCE Journal of Computing in Civil Engineering, vol. 16, no. 4, pp. 259–268, October, 2002.
Tagged BibTex xml
and V. Choi, Bailey J., Schuler G., Gu Z., Li P., Farach-Colton M., Eichler E.,
"The Sequence and Assembly of Highly Duplicated Regions in the Human Genome",
Genome Sequencing & Biology meeting , Cold Spring Harbor Laboratory, 2002.
Tagged BibTex xml
Heath L.S., Ramakrishnan N., Sederoff R.R., Whetten R.W., Chevone B.I., Struble C.A., Jouenn V.Y., Chen D., van Zyl L., Grene R.,
"Studying the Functional Genomics of Stress Responses in Loblolly Pine using the Expresso Microarray Management System",
Comparative and Functional Genomics , vol. 3, pp. pp. 226-243. , 2002.
Tagged BibTex xml
Heath L.S.,
"Networks in Bioinformatics",
Proceedings of the 2002 International Symposium on Parallel Architectures, Algorithms, and Networks (I-SPAN 2002), pp. pp. 141-150. , 2002.
Tagged BibTex xml
Slotta D.J., Heath L.S., Ramakrishnan N., Helm R., Potts M.,
"Computational Approaches to Combining Predictive Biological Models",
Advanced Simulation Technologies Conference (HPC 2002), 2002, , pp. pp. 75-80. , 2002.
Tagged BibTex xml
Watkinson J.I., Sioson A.A., Shukla M., Heath L.S., Ramakrishnan N., Chevone B.I., Watson L.T., Weller J.W., Sederoff R.R., van Zyl L., Alscher R.G.,
"Identifying Changes in Gene Expression During Drought Stress Using Expresso (Poster)",
ASPB (American Society of Plant Biologists) Plant Biology 2002, Denver, CO, 08/2002.
Tagged BibTex xml
Sandu A., Daescu D., Carmichael G R.,
"Adjoint data assimilation for aerosol dynamics",
Proceedings of the second International Conference on Air Polution Modeling and Simulation (APMS-2001), pp. 319–331, 2002.
Tagged BibTex xml
Watson L T., Lohani V K., Kibler D F., Dymond R L., Ramakrishnan N., Shaffer C A.,
"Integrated computing environments for watershed management",
J. Comput. Civil Engrg., vol. 16, pp. 259–268, 2002.
Tagged BibTex xml
Kim H., Mason W H., Watson L T., Grossman B., Papila M., Haftka R T.,
"Protection against modeling and uncertainties in design optimization",
Modeling and Simulation-Based Life Cycle Engineering, Spon Press, London, 2002, pp. 231–246, 2002.
Tagged BibTex xml
Zwolak J W., Tyson J J., Watson L T.,
"Parameter estimation in a cell cycle model for frog egg extracts",
Proc. High Performance Computing Symposium 2002, A. Tentner (ed.), Soc. for Modeling and Simulation Internat., San Diego, CA, pp. 67-74, 2002.
Tagged BibTex xml
Adams D B., Watson L T., Gurdal Z.,
"Blending of composite panel designs using genetic algorithms",
Proc. 16th Internat. Parallel & Distributed Processing Symp., CD-ROM, IEEE Computer Soc., Los Alamitos, CA, pp. 6 pages, 2002.
Tagged BibTex xml
Gantovnik V B., Gurdal Z., Watson L T.,
"Genetic algorithm with memory for optimal design of laminated sandwich composite panels",
AIAA Paper 2002–1221, in Proc. AIAA/- ASME/ASCE/AHS/ASC 43rd Structures, Structural Dynamics, and Materials Conf., CD-ROM, Denver, CO, pp. 8 pages, 2002.
Tagged BibTex xml
Gantovnik V B., Gurdal Z., Watson L T.,
"Genetic algorithm with memory for optimal design of laminated sandwich composite panels",
AIAA Paper 2002–1221, in Proc. AIAA/- ASME/ASCE/AHS/ASC 43rd Structures, Structural Dynamics, and Materials Conf., CD-ROM, Denver, CO, pp. 8 pages, 2002.
Tagged BibTex xml
Kim H., Papila M., Haftka R T., Mason W H., L. T. Watson, Grossman B.,
"Estimating optimization error statistics via optimization runs from multiple starting points",
AIAA Paper 2002–5576, in Proc. 9th AIAA/ISSMO Symp. on Multidisciplinary Analysis and Optimization, CD-ROM, Atlanta, GA, pp. 14 pages, 2002.
Tagged BibTex xml
Perez V M., Renaud J E., Watson L T.,
"An interior point sequential approximate optimization methodology",
AIAA Paper 2002–5505, in Proc. 9th AIAA/ISSMO Symp. on Multidisciplinary Analysis and Optimization, CD-ROM, Atlanta, GA, pp. 12 pages, 2002.
Tagged BibTex xml
Cox S E., Hart W E., Haftka R T., Watson L T.,
"DIRECT algorithm with box penetration for improved local convergence",
AIAA Paper 2002–5581, in Proc. 9th AIAA/ISSMO Symp. on Multidisciplinary Analysis and Optimization, CD-ROM, Atlanta, GA, pp. 15 pages, 2002.
Tagged BibTex xml
Kumar A.V S., Marathe M.,
"Improved Results for Stackelberg Scheduling Strategies.",
The 29th International Colloquium on Automata, Languages and Programming, 2002 (ICALP), Lecture Notes in Computer Science, 2380, Springer, 2002.
Tagged BibTex xml
III H.H B., Marathe M V., Ravi R.V S S., Rosenkrantz D J., Stearns R E.,
"Parallel Approximation Schemes for a Class of Planar and Near Planar Combinatorial Problems ",
Information and Computation, vol. 173, no. 1, pp. 40-63, 2002.
Tagged BibTex xml
Doddi S., Marathe M V., Moret B.,
"Point Set Labeling with Specified Positions",
International Journal of Computational Geometry, vol. 12, no. 1-2, pp. 29-66, 2002.
Tagged BibTex xml
Barrett C., Marathe M V., Ravi S S., Smith J.,
"A Mobility and Traffic Generation Framework for Modeling and Simulating Ad~hoc Communication Networks ",
Proc. 6th ACM Symposium on Applied Computing (SAC), Madrid, Spain, pp. 122-126, March, 2002.
Tagged BibTex xml
Barrett C., Engelhart C., Marathe M., Sivasubramanium A.,
"Analyzing the Short-Term Fairness of IEEE 802.11 in Wireless Multi-hop Radio Networks ",
Proc. 10th IEEE/ACM International Symposium on Modeling, Analysis and Simulation of Computer and Telecommunication Systems, (MASCOTS'02) , October , 2002.
Tagged BibTex xml
Marathe M V.,
"Towards a Predictive Complexity Theory",
Proc. 29th International Colloquium on Automata Languages and Programming , , Malaga, Spain, pp. 22-31, 2002.
Tagged BibTex xml
Marathe M V.,
"Routing in Very large Multi-Modal Time Dependent Networks: Theory and Practice",
Proc. Algorithmic MeThods and Models for Optimization of RailwayS (ATMOS 2002) , Malaga, Spain, 2002.
Tagged BibTex xml
Anil V S., Marathe M V.,
"Improved Results for Stackelberg Scheduling Strategies",
29th International Colloquium on Automata Languages and Programming, Malaga, Spain, pp. 776-787, 2002.
Tagged BibTex xml
Krumke S., Marathe M., Poensgen D., Ravi S., Wirth H.,
"Budgeted Maximum Graph Coverage, ",
Proc. 28th International Workshop on Graph Theoretic Concepts in Computer Science, (WG), Cesky, Czech Republic, August , 2002.
Tagged BibTex xml
Barrett C., Drozda M., Marathe A., Marathe M.,
"Characterizing the Interaction Between Routing and MAC Protocols in Ad-hoc Networks, ",
3rd ACM international Symposium on Mobile Ad Hoc Networking and Computing, Lausanne, Switzerland, pp. 92-103, June , 2002.
Tagged BibTex xml
Liu R., Lloyd E., Marathe M., Ramanathan R., Ravi S.,
"Algorithmic Aspects of Topology Control Problems For Ad-hoc Networks",
3rd ACM international Symposium on Mobile Ad Hoc Networking and Computing, Lausanne, Switzerland, June , 2002.
Tagged BibTex xml
2001
Goel A., Baker C.A., Shaffer C.A., Grossman B., Watson L.T., Haftka R.T., Mason W.H.,
"VizCraft: a problem-solving environment for aircraft configuration design",
Comput. Sci. Eng., vol. 3, no. 1, Washington, DC, USA, IEEE Computer Society, pp. 56–66, 2001.
Tagged BibTex xml
Petzold L., Serban R., Li S., Raha S., Cao Y.,
"sensitivity analysis and design optimization of dierential-algebraic equation systems",
NATO Advanced Research Workshop on Computational Aspects of Nonlinear Structural Systems with Large Rigid Body Motion, 2001.
Tagged BibTex xml
Ganley J.L., Heath L.S.,
"The Pagenumber of $k$-Trees is $O(k)$",
Discrete Applied Mathematics , vol. 109, pp. pp. 215-221. , 2001.
Tagged BibTex xml
Green E.L., Heath L.S., Struble C.A.,
"Constructing Endomorphism Rings Via Duals",
International Symposium on Symbolic and Algebraic Computation (ISSAC 2000), 2001.
Tagged BibTex xml
Rosenberg A.L., Heath L.S.,
Graph Separators, with Applications,
, Norwell, Massachusetts, Kluwer Academic Publishers, pp. 264 pp, 2001.
Tagged BibTex xml
Duff J F., Merkey P., Sandu A.,
"Parallel molecular dynamics using MPI on a Scyld-style Beowulf cluster",
Proceedings of the 10th SIAM Conference on Parallel Processing for Scientific Computing, pp. 272–279, 2001.
Tagged BibTex xml
Sandu A.,
A spectral method for solving aerosol dynamics,
, no. CSTR-01-04, 1400 Townsend Drive, Houghton, MI 49931, Department of Computer Science, Michigan Technological University, 2001.
Tagged BibTex xml
Goel A., Baker C A., Shaffer C A., Grossman B., Mason W H., Watson L T., Haftka R T.,
"VizCraft: a problem solving environment for configuration design of a high speed civil transport",
Comput. Sci. Engrg., vol. 3, pp. 56–66, 2001.
Tagged BibTex xml
Cox S E., Haftka R T., Baker C A., Grossman B., Mason W H., Watson L T.,
"Global multidisciplinary optimization of a high speed civil transport",
J. Global Optim., vol. 21, pp. 415–433, 2001.
Tagged BibTex xml
Kim H., Papila M., Mason W H., Haftka R T., Watson L T., Grossman B.,
"“Detection and repair of poorly converged optimization runs",
AIAA J., vol. 39, pp. 2242–2249, 2001.
Tagged BibTex xml
Hosder S., Watson L T., Grossman B., Mason W H., Kim H., Haftka R T., Cox S.,
"Polynomial response surface approximations for the multidisciplinary design optimization of a high speed civil transport",
Optim. Engrg., vol. 2, pp. 431–452, 2001.
Tagged BibTex xml
Watson L T.,
"Globally convergent homotopy methods",
Encyclopedia of Optimization, Kluwer, Norwell, MA, A. Floudas and P. M. Pardalos (eds.), 2001.
Tagged BibTex xml
Watson L T.,
"Multidisciplinary design optimization",
Encyclopedia of Optimization, Kluwer, Norwell, MA, C. A. Floudas and P. M. Pardalos (eds.), 2001.
Tagged BibTex xml
Billups S C., Speight A L., Watson L T.,
"Nonmonotone path following methods for nonsmooth equations and complementarity problems",
Applications and Algorithms of Complementarity, M. C. Ferris, O. L. Mangasarian, and J.-S. Pang (eds.), Kluwer, Norwell, MA, 2001.
Tagged BibTex xml
Adams D B., Watson L T., Gurdal Z.,
"Global/local optimization and blending using genetic algorithms with migration",
Proc. 10th SIAM Conf. on Parallel Processing for Scientific Computing, CD-ROM, SIAM, Philadelphia, PA, pp. 8 pages, 2001.
Tagged BibTex xml
Watson L T., Baker C A.,
"A fully distributed parallel global search algorithm",
Proc. 10th SIAM Conf. on Parallel Processing for Scientific Computing, CD-ROM, SIAM, Philadelphia, PA, pp. 10 pages, 2001.
Tagged BibTex xml
Zwolak J W., Tyson J J., Watson L T.,
"Estimating rate constants in cell cycle models",
Proc. High Performance Computing Symposium 2001, A. Tentner (ed.), Soc. for Modeling and Simulation Internat., San Diego, CA, pp. 53–57, 2001.
Tagged BibTex xml
Gurdal Z., Watson L T.,
"Structural design using cellular automata",
Proc. Third Internat. Conf. on Intelligent Processing and Manufacturing of Materials, J. A. Meech, S. M. Veiga, M. M. Veiga, S. R. LeClair, and J. F. Maguire (eds.), CD-ROM, Vancouver, Canada, pp. 4 pages, 2001.
Tagged BibTex xml
Duncan C., Kobourov S., Kumar A.V S.,
"Optimal Constrained Graph Exploration",
Proceedings of the 12th ACM Symposium on Discrete Algorithms (SODA), pp. 807-814, 2001.
Tagged BibTex xml
Krysta P., Kumar A.V S.,
"Approximation algorithms for minimum size 2-connectivity problems.",
Proceedings of the 18th International Symposium on Theoretical Aspects of Computer Science (STACS), Lecture Notes in Computer Science, n. 2010, Springer, pp. 431- 442, 2001.
Tagged BibTex xml
Krumke S O., Marathe M V., Noltemeier H., Ravi S S., Wirth H C.,
"Upgrading Bottleneck Constrained Forests",
Discrete Applied Mathematics, vol. 108, no. 1-2, pp. 129-142, 2001.
Tagged BibTex xml
Barrett C., Cook D., Faber V., Hicks G., Marathe A., Marathe M V., Srinivasan A., Sussmann Y., Thornquist H.,
"Experimental Analysis of Algorithms for Bilateral-Contract Clearing Mechanisms Arising in Deregulated Power Industry ",
Proc. 5th Workshop on Algorithmic Engineering (WAE), Aarhus, Denmark, pp. 171-184, August , 2001.
Tagged BibTex xml
Barrett C L., III H.H B., Marathe M V., Ravi S S., Rosenkrantz D J., Stearns R E., Tosic P.,
"Garden of Eden and Fixed Point Configurations in Sequential Dynamical Systems ",
Proc. International Conference on Discrete Models in Combinatorics, Computation and Geometry (DM-CCG) , pp. 95-110, June, 2001.
Tagged BibTex xml
Istrate G., Marathe M V., Ravi S S.,
"Adversarial Models in Evolutionary Game Dynamics, 2001",
Proc. 12th ACM-SIAM Symposium on Discrete Algorithms (SODA), pp. 719-720, January , 2001.
Tagged BibTex xml
2000
Cao Y., Li S., Petzold L.,
"Adjoint sensitivity analysis for DAE systems",
NSF-KDI/IGPP W orkshop 2000 on Accurate Simulation and Modelling of Physical Systems, San Diego, 2000.
Tagged BibTex xml
Lenwood S. Heath, Ramakrishnan N., Sederoff R.R., van Zyl L., Chen D., and Y.-H. Sun, Chevone B.I., Li S -H., Ye K., Whetten R., Alscher R.G.,
"Effects of Drought Stress on Gene Expression Patterns in the Needles of Loblolly Pine Trees: Towards a PSE for the Analysis of Microarray Data (Poster)",
Gordon Conference on Biological Regulatory Mechanisms, Holderness, NH, 07/2000.
Tagged BibTex xml
Baker C A., Watson L T., Cox S E., Grossman B., Haftka R T., Mason W H.,
"Study of a global design space exploration method for aerospace vehicles",
Proc. 5th NASA High Performance Computing and Communications Computational Aerosciences Workshop, CD-ROM, Mountain View, CA, pp. 10 pages, 2000.
Tagged BibTex xml
Ragon S., Gurdal Z., Watson L T.,
"A comparison of three algorithms for tracing nonlinear equilibrium paths of structural systems",
Proc. AIAA/ASME/ASCE/AHS/ASC 41st Structures, Structural Dynamics, and Materials Conf., CD-ROM, Atlanta, GA, pp. 11 pages, 2000.
Tagged BibTex xml
Kim H., Papila M., Mason W H., Haftka R T., Watson L T., Grossman B.,
"Detection and correction of poorly converged optimizations by iteratively reweighted least squares",
AIAA Paper 2000-1525, in Proc. AIAA/ASME/ASCE/AHS/ASC 41st Structures, Structural Dynamics, and Materials Conf., CD-ROM, Atlanta, GA, 2000.
Tagged BibTex xml
Baker C A., Watson L T., Grossman B., Haftka R T., Mason W H.,
"Parallel global aircraft configuration design space exploration",
Proc. High Performance Computing Symposium 2000, A. Tentner (ed.), Soc. for Computer Simulation Internat., San Diego, CA, pp. 101–106, 2000.
Tagged BibTex xml
Cox S E., Haftka R T., Baker C., Grossman B., Mason W H., Watson L T.,
"Global optimization for noise and multiple local optima",
Proc. Internat. Workshop on Multidisciplinary Design Optim., Pretoria, South Africa, pp. 50–59, 2000.
Tagged BibTex xml
Kim H., Haftka R T., Mason W H., Watson L T., Grossman B.,
"A study of the statistical description of errors from structural optimization",
AIAA Paper 2000–4840–CP, in Proc. 8th AIAA/USAF/NASA/ISSMO Symp. on Multidisciplinary Analysis and Optimization, CD-ROM, Long Beach, CA, 2000.
Tagged BibTex xml
Baker C A., Watson L T., Grossman B., Haftka R T., Mason W H.,
"Parallel global aircraft configuration design space exploration",
AIAA Paper 2000–4763–CP, in Proc. 8th AIAA/USAF/NASA/ISSMO Symp. on Multidisciplinary Analysis and Optimization, CD-ROM, Long Beach, CA, 2000.
Tagged BibTex xml
Goel A., Phanouriou C., Kamke F A., Ribbens C.J., Shaffer C A., Watson L T.,
"WBCSim: A prototype PSE for wood-based composites simulations",
Enabling Technologies for Computational Science: Frameworks, Middleware and Environments, pp. 187-196, 2000.
Tagged BibTex xml
Kumar A.V S., Arya S., Hariharan R.,
"Hardness of Set Covering with Intersection 1",
Proceedings of the 27th International Colloquium on Automata, Languages and Programming (ICALP), Lecture Notes in Computer Science, vol 1853, pp 624-635, 2000, 2000.
Tagged BibTex xml
Doddi S., Marathe M V., Taylor R.S S D., Widmayer P.,
"Approximation algorithms for clustering to minimize the sum of diameters ",
Nordic Journal of Computing, vol. 7, no. 3, pp. 185-203, August, 2000.
Tagged BibTex xml
Doddi S., Marathe M V., Moret B.,
"Point Set Labeling with Specified Positions",
Proc. ACM Symposium on Computational Geometry (SoCG) , Hong Kong, pp. 182-190, June, 2000.
Tagged BibTex xml
Dowell L J., Drozda M., Henderson B., Loose V., Marathe M., Roberts D.,
"Scalability of ELISIMS: Comprehensive Detailed Simulation of Electric Power Industry ",
Proc. IEEE International Conference on Systems, Man and Cybernetics, (SMC) , Nashville, October , 2000.
Tagged BibTex xml
Doddi S., Marathe M V., Taylor R.S S D., Widmayer P.,
"Approximation algorithms for clustering to minimize the sum of diameters ",
Proc. 7th Scandinavian Workshop on Algorithm Theory, (SWAT) July, Bergen, Norway, July, 2000.
Tagged BibTex xml
and G. Konjevod K.S M V., Krumke S., Marathe M V.,
"Budget Constrained Minimum Cost Connected Medians",
Proc. 26th International Workshop on Graph Theoretic Concepts in Computer Science, (WG) Proc. 26th International Workshop on Graph Theoretic Concepts in Computer Science, (WG) , Konsantz, Germany, June, 2000.
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Marathe M V., Risenger L D., Panconesi A.,
"Experimental Analysis of a Simple Distributed Edge Coloring Algorithm ",
Proc. 12th ACM Symposium on Parallel Algorithms and Architectures, (SPAA), Maine, pp. 166-175, July , 2000.
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Carr R., Doddi S., Konjevod G., Marathe M V.,
"On the Red-Blue Set Cover Problem",
Proc. 11th ACM-SIAM Symposium on Discrete Algorithms (SODA), pp. 345-353, January , 2000.
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Cook D., Faber V., Hicks G., Marathe M V., Srinivasan A., Sussmann Y.,
"Combinatorial Problems Arising in Deregulated Electrical Power Industry: Survey and Future Directions ",
Proc. Approximation and Complexity in Numerical Optimization: Continuous and Discrete Problems , P. M. Pardalos, Editor: Kluwer Academic Publishers, pp. 138-162, 2000.
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III H.H B., Stearns R E., Marathe M V.,
"On the Efficient Approximability of "HARD" Problems: A Survey",
Proc. Approximation and Complexity in Numerical Optimization: Continuous and Discrete Problems , P. M. Pardalos, Editor: Kluwer Academic Publishers, pp. 308-322, 2000.
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1999
Carmichael G R., Sandu A., Song C H., He S., Phadnis M., Daescu D., Damian-Iordache V., Potra F A., Zlatev Z.,
"Computational challenges of modeling interactions between aerosol and gas phase processes",
NATO Advanced Study Institute on Computational Challenges in Air Pollution Modeling, pp. 99–136, 1999.
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Kumar A.V S., Hariharan R.,
"Markovian Coupling v/s Conductance for the Jerrum-Sinclair Chain",
Proceedings of the 40th Annual IEEE Symposium on Foundations of Computer Science (FOCS), pp. 241-252, 1999.
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Kumar A.V S., Hariharan R.,
"Covering Rectilinear Polygons with Axis-Parallel Rectangles",
Proceedings of the 31st Annual ACM Symposium on Theory of Computing (STOC), pp. 445-454, 1999.
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1998
Shaffer C.A., Knill D.L., Watson L.T.,
"Visualization for multiparameter aircraft designs",
VIS '98: Proceedings of the conference on Visualization '98, Los Alamitos, CA, USA, IEEE Computer Society Press, pp. 491–494, 1998.
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Heath L.S., Vergara J.C.,
"Sorting by Bounded Block-Moves",
Discrete Applied Mathematics , vol. 88, no. 2, pp. pp. 181-206. , 1998.
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Heath L.S., Vergara J.C.,
"Edge-Packing in Planar Graphs",
Theory of Computing Systems , vol. 31, pp. pp. 629-662. , 1998.
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1997
Heath L.S., Pemmaraju S.V.,
"Stack and Queue Layouts of Posets,",
SIAM Journal on Discrete Mathematics , vol. 10, pp. pp. 599-625. , 1997.
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Heath L.S.,
"Graph Embeddings and Simplicial Maps",
Theory of Computing Systems , vol. 30, pp. pp 51-65., 1997.
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Heath L.S., Hix D., Nowell L.T., Wake W.C., Averboch G.A., Labow E., Guyer S.A., Brueni D.J., France R.K., Dalal K., Fox E.A.,
"Envision: A User-Centered Database of Computer Science Literature",
Communications of the ACM , vol. 38, pp. pp. 52-53, 1997.
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1996
Nowell L.T., France R.K., Hix D., Heath L.S., Fox E.A.,
"Visualizing Search Results: Some Alternatives to Query-Document Similarity",
19th Annual International ACM SIGIR Conference on Research and Development in Information Retrieval, , pp. pp. 67-75. , 1996.
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