2008
2007
Mishra D., Shaffer C.A., Ramakrishnan N., Watson L.T., Bae K.K., He J., Verstak A.A., Tranter W.H.,
"S4W: a problem-solving environment for wireless system design",
Softw. Pract. Exper., vol. 37, no. 14, New York, NY, USA, John Wiley & Sons, Inc., pp. 1539–1558, 2007.
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Thomas L., Shaffer C A., Mili L., Thomas E.,
"Automated Detection of Severe Surface Defects on Barked Hardwood Logs",
Forest Product Journal, vol. 57, no. 4, pp. 50–56, April, 2007.
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2006
Vass M.T., Shaffer C.A., Ramakrishnan N., Watson L.T., Tyson J.J.,
"The JigCell Model Builder: A Spreadsheet Interface for Creating Biochemical Reaction Network Models",
IEEE/ACM Trans. Comput. Biol. Bioinformatics, vol. 3, no. 2, Los Alamitos, CA, USA, IEEE Computer Society Press, pp. 155–164, 2006.
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Allen N A., Chen K C., Shaffer C A., Tyson J J., Watson L T.,
IEE Proceedings – Systems Biology,
, vol. 153, no. 1, pp. 13–21, January, 2006.
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Sauro H.M., Harel D., Kwiatkowska M., Shaffer C.A., Uhrmacher A.M., Hucka M., Mendes P., Strömback L., Tyson J.J.,
"Challenges for modeling and simulation methods in systems biology",
WSC '06: Proceedings of the 38th conference on Winter simulation: Winter Simulation Conference, pp. 1720–1730, 2006.
Tagged BibTex xml
Vass M., Shaffer C A., Ramakrishnan N., Watson L T., Tyson J J.,
"The JigCell Model Builder: A Spreadsheet Interface for Creating Biochemical Reaction Network Models",
IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. Vol. 3, no. 2, pp. 155–164, April-June, 2006.
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2005
2004
He J., Verstak A., Watson L T., Stinson C A., Ramakrishnan N., Shaffer C A., Rappaport T S., Anderson C R., Bae K., Jiang J., Tranter W H.,
"Globally Optimal Transmitter Placement for Indoor Wireless Communication Systems",
IEEE Transactions on Wireless Communications, vol. 3, no. 6, pp. 1906–1911, November, 2004.
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Vass M., Allen N., Shaffer C.A., Ramakrishnan N., Watson L.T., Tyson J.J.,
"The JigCell Model Builder and Run Manager",
Bioinformatics, vol. 20, no. 18, Oxford, UK, Oxford University Press, pp. 3680–3681, 2004.
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Skidmore R.R., Verstak A., Ramakrishnan N., Rappaport T.S., Watson L.T., He J., Varadarajan S., Shaffer C.A., Chen J., Bae K., Jiang J., Tranter W.H.,
"Towards integrated PSEs for wireless communications: experiences with the S4W and SitePlanner\textregistered projects",
SIGMOBILE Mob. Comput. Commun. Rev., vol. 8, no. 2, New York, NY, USA, ACM, pp. 20–34, 2004.
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He J., Sosonkina M., Shaffer C A., Tyson J J., Watson L T., Zwolak J W., Meyer J.,
"A Hierarchical Parallel Scheme for a Global Search Algorithm",
Proceedings of the 2004 High Performance Computing Symposium (HPC'04): Society for Modeling and Simulation International, pp. 43–50, 2004.
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Saraiya P., Shaffer C.A., McCrickard S.D., North C.,
"Effective features of algorithm visualizations",
Proceedings of the 35th SIGCSE technical symposium on Computer Science Education, pp. 382 - 386, March , 2004.
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2003
Allen N A., Shaffer C A., Vass M T., Ramakrishnan N., Watson L T.,
"Improving the Development Process for Eukaryotic Cell Cycle Models with a Modeling support environment",
Simulation, vol. 79, no. 12, pp. 674–688, December, 2003.
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Rubin E J., Shaffer C A., Ramakrishnan N., Watson L T., Dymond R., Kibler D., Dietz R., Chanat J., Lohani V., Bosch D., Speir C.,
"From Landscapes to Waterscapes: A PSE for Landuse Change Analysis",
Engineering with Computers, vol. 19, no. 1, pp. 9–25, July, 2003.
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Verstak A., Ramakrishnan N., Watson L.T., He J., Shaffer C.A., Bae K., Jiang J., Tranter W.H., Rappaport T.S.,
"BSML: A binding schema markup language for data interchange in problem solving environments",
Sci. Program., vol. 11, no. 3, Amsterdam, The Netherlands, The Netherlands, IOS Press, pp. 199–224, 2003.
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Su Y., Murali T M., Pavlovic V., Schaffer M., Kasif S.,
"RankGene: identification of diagnostic genes based on expression data.",
Bioinformatics, vol. 19, no. 12, pp. 1578–9, 2003.
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2002
He J., Watson L.T., Ramakrishnan N., Shaffer C.A., Verstak A., Jiang J., Bae K., Tranter W.H.,
"Dynamic Data Structures for a Direct Search Algorithm",
Comput. Optim. Appl., vol. 23, no. 1, Norwell, MA, USA, Kluwer Academic Publishers, pp. 5–25, 2002.
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Watson L T., Lohani V K., Kibler D F., Dymond R L., Ramakrishnan N., Shaffer C A.,
"Integrated Computing Environments for Watershed Management",
ASCE Journal of Computing in Civil Engineering, vol. 16, no. 4, pp. 259–268, October, 2002.
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Ramakrishnan N., Watson L T., Kafura D G., Ribbens C.J., Shaffer C A.,
"Programming Environments for Multidisciplinary Grid Communities",
Concurrency and Computation: Practice and Experience, vol. 13–15, pp. 1241–1273, Nov–December, 2002.
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Vass M., Carroll J.M., Shaffer C.A.,
"Supporting creativity in problem solving environments",
C&C '02: Proceedings of the 4th conference on Creativity & cognition, New York, NY, USA, ACM, pp. 31–37, 2002.
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2001
Begole J., Smith R.B., Struble C.A., Shaffer C.A.,
"Resource sharing for replicated synchronous groupware",
IEEE/ACM Trans. Netw., vol. 9, no. 6, Piscataway, NJ, USA, IEEE Press, pp. 833–843, 2001.
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Goel A., Baker C.A., Shaffer C.A., Grossman B., Watson L.T., Haftka R.T., Mason W.H.,
"VizCraft: a problem-solving environment for aircraft configuration design",
Comput. Sci. Eng., vol. 3, no. 1, Washington, DC, USA, IEEE Computer Society, pp. 56–66, 2001.
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2000
Shaffer C A., Watson L T., Kafura D G., Ramakrishnan N., Tentner A.,
"Features of Problem Solving Environments for Computational Science",
Proceedings of the 2000 High Performance Computing Symposium (HPC'00): Society for Computer Simulation International, pp. 242–247, 2000.
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Shaffer C., Watson L., Lorch M., Ramakrishnan N.,
"Features of Problem Solving Environments for Computational Science",
High Performance Computing Symposium, San Diego, CA, Society for Computer Simulation International, April 2000.
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Goel A., Phanouriou C., Kamke F A., Ribbens C.J., Shaffer C A., Watson L T.,
"WBCSim: A prototype PSE for wood-based composites simulations",
Enabling Technologies for Computational Science: Frameworks, Middleware and Environments, pp. 187-196, 2000.
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1999
Begole J., Rosson M., Shaffer C.A.,
"Flexible collaboration transparency: supporting worker independence in replicated application-sharing systems",
ACM Trans. Comput.-Hum. Interact., vol. 6, no. 2, New York, NY, USA, ACM, pp. 95–132, 1999.
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Goel A., Phanouriou C., Kamke F A., Ribbens C.J., Shaffer C A., Watson L T.,
"WBCSim: A Prototype Problem Solving Environment for Wood-Based Composites Simulations",
Engineering with Computers, vol. 15, no. 2, pp. 198–210, 1999.
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Goel A., Baker C., Shaffer C A., Grossman B., Haftka R., Mason W., Watson L.,
"VizCraft: A Multidimensional Visualization Tool for Aircraft Configuration Design",
VISUALIZATION '99: Proceedings of the 10th IEEE Visualization 1999 Conference (VIS '99), Washington, DC, USA, IEEE Computer Society, 1999.
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Shaffer C A., Watson L T., Kafura D G.,
"Component Frameworks for Problem Solving Environments in Computational Science",
Proceedings of the 1st Symposium on Reusable Architectures and Components for Developing Distributed Information Systems (RACDIS'99), pp. 653–656, August, 1999.
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1998
Begole J., Rosson M., Shaffer C.A.,
"Supporting worker independence in collaboration transparency",
UIST '98: Proceedings of the 11th annual ACM symposium on User interface software and technology, New York, NY, USA, ACM, pp. 133–142, 1998.
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1996
1995
Fox E A., Barnette N D., Shaffer C A., Heath L., Wake W., Nowell L T., Lee J A N., Hix D., Hartson H R.,
"Progress in Interactive Learning with a Digital Library in Computer Science",
Proceedings ED-MEDIA 95, World Conf. on Educational Multimedia and Hypermedia, June, 1995.
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1994
Bright J S., Shaffer C A., Nagarkatti P S., Nagarkatti M.,
"Computer Simulation of the Immune System",
Proceedings of the Fourteenth Annual Seminar of Cancer Researchers in Virginia, pp. {17}., March, 1994.
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1993
Shaffer C.A., Brown P.R.,
"A Paging Scheme for Pointer-Based Quadtrees",
SSD '93: Proceedings of the Third International Symposium on Advances in Spatial Databases, London, UK, Springer-Verlag, pp. 89–104, 1993.
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1992
Shaffer C A.,
Data representations for Geographic Information Systems,
, vol. 27, Medford, NJ, American Society for Information Science, pp. 135–172, 1992.
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Shaffer C.A., Feustel C.D.,
Exact computation of 2–D intersections,
, San Diego, CA, USA, Academic Press Professional, Inc., pp. 188–192, 1992.
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1991
Shaffer C.A.,
"Real-time robot arm collision detection for telerobotics",
Comput. Electr. Eng., vol. 17, no. 3, Tarrytown, NY, USA, Pergamon Press, Inc., pp. 205–215, 1991.
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Shaffer C.A., Stout Q.F.,
"Linear time distance transforms for quadtrees",
CVGIP: Image Underst., vol. 54, no. 2, Orlando, FL, USA, Academic Press, Inc., pp. 215–223, 1991.
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Lattanzi M.R., Shaffer C.A.,
"An optimal boundary to quadtree conversion algorithm",
CVGIP: Image Underst., vol. 53, no. 3, Orlando, FL, USA, Academic Press, Inc., pp. 303–312, 1991.
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1990
Oskard D N., Hong T -H., Shaffer C A.,
"Real-Time Algorithms and Data Structures for Underwater Mapping",
IEEE Transactions on Systems, Man, and Cybernetics, vol. 20, no. 6, pp. 1469–1475, November/Decembe, 1990.
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