2009
2008
Panning T.D., Watson L.T., Allen N.A., Chen K.C., Shaffer C.A., Tyson J.J.,
"Deterministic parallel global parameter estimation for a model of the budding yeast cell cycle",
J. of Global Optimization, vol. 40, no. 4, Hingham, MA, USA, Kluwer Academic Publishers, pp. 719–738, 2008.
Tagged BibTex xml
Shu* J., Watson L T., Ramakrishnan N., Kamke F A., North C.,
"Unification of problem solving environment implementation layers with XML-based specifications",
Advances in Engineering Software, vol. 39, no. 3, pp. 189-201, March, 2008.
Tagged BibTex xml
Giraud L., Haidar A., Watson L T.,
"Mixed-precision preconditioners in parallel domain decomposition solvers",
Lecture Notes in Computational Science and Engineering: Domain Decomposition Methods in Science and Engineering XVII: U. Langer, M. Discacciati, D. Keyes, O. Widlund, and W. Zulehner (eds.), Springer, Berlin, 2008.
Tagged BibTex xml
2007
Mishra D., Shaffer C.A., Ramakrishnan N., Watson L.T., Bae K.K., He J., Verstak A.A., Tranter W.H.,
"S4W: a problem-solving environment for wireless system design",
Softw. Pract. Exper., vol. 37, no. 14, New York, NY, USA, John Wiley & Sons, Inc., pp. 1539–1558, 2007.
Tagged BibTex xml
Panning T.D., Watson L.T., Shaffer C.A., Tyson J.J.,
"A Mathematical Programming Formulation for the Budding Yeast Cell Cycle",
Simulation, vol. 83, no. 7, San Diego, CA, USA, Society for Computer Simulation International, pp. 497–514, 2007.
Tagged BibTex xml
Hakami A., Henze D K., Seinfeld J H., Singh K., Sandu A., Kim S., Byun D., Li Q.,
"The adjoint of CMAQ",
Environmental Science and Technology, vol. 41, no. 22, pp. 7807–7817, 2007.
Tagged BibTex xml
Constantinescu E M., Sandu A., Chai T., Carmichael G R.,
"Ensemble-based chemical data assimilation. I: General approach",
Quarterly Journal of the Royal Meteorological Society, vol. 133, no. 626, pp. 1229–1243, July, 2007.
Tagged BibTex xml
Constantinescu E M., Sandu A., Chai T., Carmichael G R.,
"Ensemble-based chemical data assimilation. II: Covariance localization",
Quarterly Journal of the Royal Meteorological Society, vol. 133, no. 626, pp. 1245–1256, July, 2007.
Tagged BibTex xml
Chai T., Carmichael G R., Tang Y., Sandu A., Hardesty M., Pilewskie P., Whitlow S., Browell E V., Avery M A., Thouret V., Nedelec P., Merrill J T., and Thomson A M.,
"Four dimensional data assimilation experiments with ICARTT (International Consortium for Atmospheric Transport and Transformation) ozone measurements",
Journal of Geophysical Research, vol. 112, no. D12S15, 2007.
Tagged BibTex xml
Mongan J., Simmerling C., McCammon J A., Case D A., Onufriev A.,
"Generalized Born Model with a Simple, Robust Molecular Volume Correction",
J. Chem. Theory and Comput, vol. 3, pp. 156-169, 2007.
Tagged BibTex xml
Saha N., Watson L T., Kafadar K., Ramakrishnan N., Onufriev A., Mane S P., Vasquez-Robinet C.,
"Validation and estimation of parameters for a general probabilistic model of the PCR process",
J. Comp. Biol., vol. 14, pp. 102–117, 2007.
Tagged BibTex xml
Iyer M A., Watson L T., Birch J B.,
"pRIPPLE: a parallel version of a polynomial-time piecewise linear estimation algorithm",
Proc. 2007 Spring Simulation Multiconf., Business and Industry Symp., Vol. II, M. J. Ades, M. J. Chinni, J. A. Hamilton, Jr., J. M. D. Hill, H. Rajaei, and C.-H. Wu (eds.), Soc. for Modeling and Simulation Internat., vol. 2, San Diego, CA, pp. 99–103, 2007.
Tagged BibTex xml
Phillips R D., Watson L T., Wynne R H.,
"A shared memory parallel algorithm for hybrid image classificatio",
Proc. 2007 Spring Simulation Multiconf., High Performance Computing Symp., M. J. Ades, M. J. Chinni, J. Nutaro, T. ¨Oren, H. Rajaei, and L. Watson (eds), Soc. for Modeling and Simulation Internat., vol. 1, pp. 405–411, 2007.
Tagged BibTex xml
Phillips R D., Watson L T., Wynne R H., Blinn C E.,
"Data reduction using the singular value decomposition for a hybrid classifier",
Proc. 2007 Internat. Conf. on Scientific Computing: H. R. Arabnia, J. Y. Yang, and M. Q. Yang (eds.), CSREA Press, USA, pp. 183–188, 2007.
Tagged BibTex xml
Zhang J., Watson L T.,
"A modified uniformization method for the chemical master equation",
Proc. 7th IEEE Internat. Conf. on Bioinformatics and Bioengineering, Boston, MA, pp. 1429–1433, 2007.
Tagged BibTex xml
Sudarsan R., Ribbens C.J.,
"Efficient multidimensional data redistribution for resizable parallel computations",
Proceedings, Fifth International Symposium on Parallel and Distributed Processing and Applications (ISPA-07), Berlin, Springer-Verlag, pp. 182–194, 2007.
Tagged BibTex xml
Belgin M., Ribbens C.J., Back G.,
"An operation stacking framework for large ensemble computations",
Proceedings of the 21st ACM International Conference on Supercomputing (ICS07), New York, B. Smith (ed.), 2007, ACM, pp. 83–92, 2007.
Tagged BibTex xml
2006
Vass M.T., Shaffer C.A., Ramakrishnan N., Watson L.T., Tyson J.J.,
"The JigCell Model Builder: A Spreadsheet Interface for Creating Biochemical Reaction Network Models",
IEEE/ACM Trans. Comput. Biol. Bioinformatics, vol. 3, no. 2, Los Alamitos, CA, USA, IEEE Computer Society Press, pp. 155–164, 2006.
Tagged BibTex xml
Sandu A.,
"On the Properties of Runge-Kutta Discrete Adjoints",
Lecture Notes in Computer Science, vol. LNCS 3994,: "International Conference on Computational Science", pp. 550–557, 2006.
Tagged BibTex xml
Sandu C., Sandu A., and Li L.,
"Modeling of stochastic terrain profiles and soil parameters",
SAE 2005 Transactions – Journal of Commercial Vehicles, vol. 114, no. 2, pp. 211–220, 2006.
Tagged BibTex xml
Saha N., Watson L T., Kafadar K., Onufriev A., Ramakrishnan N., Vasquez-Robinet C., Watkinson J.,
"A general probabilistic model of the PCR process",
Appl. Math. Comput, vol. 182 , pp. 232–243, 2006.
Tagged BibTex xml
Myers J., Grothaus G., Onufriev A.,
"A simple, robust approach to calculat- ing partition function of protonation microstates in biomolecules.",
Proteins: Structure, Function, and Bioinformatics, vol. 63, pp. 928 - 938 , 2006.
Tagged BibTex xml
Goel T., Haftka R T., Shyy W., Watson L T.,
"Pointwise RMS bias error estimates for design of experiments",
Proc. 44th AIAA Aerospace Sciences Meeting & Exhibit, AIAA Paper 2006-0724, Reno, NV, pp. 22 pages, 2006.
Tagged BibTex xml
Iyer M A., Watson L T.,
"An interpolation method for high dimensional scattered data",
Proc. 2006 Spring Simulation Multiconf., Business and Industry Symp., J. A. Hamilton, Jr., R. MacDonald, and M. J. Chinni (eds.), Soc. for Modeling and Simulation Internat., San Diego, CA, pp. 217–222, 2006.
Tagged BibTex xml
He J., Verstak A., Watson L T., Sosonkina M.,
"Performance studies of a parallel global search algorithm on System X",
Proc. 2006 Spring Simulation Multiconf., High Performance Computing Symp., J. A. Hamilton, Jr., R. MacDonald, and M. J. Chinni (eds.), Soc. for Modeling and Simulation Internat, San Diego, CA, 209–214, 2006.
Tagged BibTex xml
Watson L T., Trosset M W., Kugele S C.,
"Statistical decision-theoretic methods for robust design optimization",
Proc. 2006 NSF Design, Service, and Manufacturing Grantees and Research Conf., CD-ROM, St. Louis, MO, pp. 13 pages, 2006.
Tagged BibTex xml
Goel T., Haftka R T., Shyy W., Watson L T.,
"Combining bias and variance based criteria for selecting experimental designs",
Proc. 2006 NSF Design, Service, and Manufacturing Grantees and Research Conf., CD-ROM, St. Louis, MO, pp. 16 pages, 2006.
Tagged BibTex xml
2005
Sandu A., M. Constantinescu E., Liao W., R. Carmichael G., Chai T., H. Seinfeld J., Daescu D.,
"Ensemble Filter Data Assimilation for Atmospheric Chemical and Transport Models",
International Conference on Computational Science (ICCS05): International Conference on Computational Science, pp. 648–656, 2005.
Tagged BibTex xml
Constantinescu E M., Liao W., Sandu A.,
"Mesh Refinement Strategies in Air Quality Modeling",
High Performance Computing Symposium (HPC 2005): High Performance Computing Symposium, pp. 158–163, 2005.
Tagged BibTex xml
Constantinescu E M., Sandu A.,
"On Adaptive Mesh Refinement for Atmospheric Pollution Models",
Lecture Notes in Computer Science, vol. 3515: "International Conference on Computational Science", pp. 798–806, 2005.
Tagged BibTex xml
Hakami A., Henze D K., Seinfeld J H., Chai T., Tang Y., Carmichael G R., Sandu A.,
"Adjoint inverse modeling of black carbon during ACE-Asia",
Journal of Geophysical Research, vol. 110, no. D14, 2005.
Tagged BibTex xml
Case D A., Darden T., Cheatham T., Gohlke H., Merz K., Onufriev A., Luo R., Woods R.,
"The Amber Bio-molecular Simulation Programs",
Journal of Computational Chemistry , vol. 26, pp. 1668-1688, 2005.
Tagged BibTex xml
Hosder S., Grossman B., Haftka R T., Mason W H., Watson L T.,
"Observations on CFD simulation uncertainties",
Proc. 9th AIAA/ISSMO Symp. on Multidisciplinary Analysis and Optimization, CD-ROM, Atlanta, GA, pp. 18 pages, 2005.
Tagged BibTex xml
Adams D B., Watson L T., Seresta O., Gurdal Z.,
"Global/local iteration for blended composite laminate panel structure optimization subproblems",
Proc. High Performance Computing Symposium 2005, M. Parashar and L. Watson (eds.) Soc. for Modeling and Simulation Internat., San Diego, CA, pp. 151-157, 2005.
Tagged BibTex xml
He J., Sosonkina M., Watson L T., Verstak A., Zwolak J W.,
"Data-distributed parallelism with dynamic task allocation for a global search algorithm",
Proc. High Performance Computing Symposium 2005, M. Parashar and L. Watson (eds.), Soc. for Modeling and Simulation Internat.: San Diego, CA, pp. 164–172, 2005.
Tagged BibTex xml
Barkhi R., James T., Watson L.,
"Problem characteristics determining the appropriateness of genetic algorithm approaches",
Proc. Business and Industry Symposium 2005, M. J. Ades and T. Hang (eds.), Soc. for Modeling and Simulation Internat., San Diego, CA, pp. 135–139, 2005.
Tagged BibTex xml
Belgin M., Ribbens C.J.,
"Improving the performance of HPC applications by using operation stacking",
Proceedings of ICCSE2005, The International Conference on Computational Science and Engineering, H. Dag and Y. Deng (eds.), Istanbul Technical University, pp. 183–190, 2005.
Tagged BibTex xml
Ribbens C.J., Varadarjan S., Chinnusamy M., Swaminathan G.,
"Balancing computational science and computer science research on a terascale computing facility",
Proceedings of ICCS 2005, the 5th International Conference on Computational Science, Berlin, V. Sunderam, G. van Albada, P. Sloot, J. Dongarra (eds.), Springer-Verlag, pp. 60–67, 2005.
Tagged BibTex xml
2004
Vass M., Allen N., Shaffer C.A., Ramakrishnan N., Watson L.T., Tyson J.J.,
"The JigCell Model Builder and Run Manager",
Bioinformatics, vol. 20, no. 18, Oxford, UK, Oxford University Press, pp. 3680–3681, 2004.
Tagged BibTex xml
Skidmore R.R., Verstak A., Ramakrishnan N., Rappaport T.S., Watson L.T., He J., Varadarajan S., Shaffer C.A., Chen J., Bae K., Jiang J., Tranter W.H.,
"Towards integrated PSEs for wireless communications: experiences with the S4W and SitePlanner\textregistered projects",
SIGMOBILE Mob. Comput. Commun. Rev., vol. 8, no. 2, New York, NY, USA, ACM, pp. 20–34, 2004.
Tagged BibTex xml
Chai T., Carmichael G R., Daescu D., Sandu A.,
"Analysis of Trace-P observations using a 4D-Var data assimilation technique",
{Proceedings of the 84-th American Meteorological Society annual meeting}, vol. Session 8:, no. 8.4, pp. 6, January 11-15, 2004.
Tagged BibTex xml
Carmichael G R., Sandu A., Daescu D., Chai T., Seinfeld J H., Hess P., Anderson T.,
"Chemical data assimilation in support of air quality forecasting",
Proceedings of the 84-th American Meteorological Society annual meeting, vol. Session 2:, no. 2.1, pp. 6, January 11-15, 2004.
Tagged BibTex xml
Sandu A., Liao W., Carmichael G R., Henze D., Seinfeld J H., Chai T., Daescu D.,
"Computational aspects of data assimilation for aerosol dynamics",
Lecture Notes in Computer Science, vol. 3038: Springer-Verlag GmbH, pp. 709–716, June, 2004.
Tagged BibTex xml
Tang Y., Carmichael G R., Horowitz L W., Uno I., Woo J H., Streets D G., Dabdub D., Kurata G., Sandu A., Allan J., Atlas E., Flocke F., Huey L G., Jakoubek R O., Millet D B., Parrish D D., Quinn P K., Roberts J M., Ryerson T B., Williams E., Nowak J B., Worsnop D., Goldstein A., Donnelly S., Schauffler S., Stroud V., Johnson K., Avery M A., Singh H B., Apel E C.,
"Multi-scale simulations of tropospheric chemistry in the Eastern Pacific and U.S. West coast during spring 2002",
Journal of Geophysical Research - Atmospheres, vol. 109, no. D23, 2004.
Tagged BibTex xml
Tang Y., Carmichael G R., Seinfeld J H., Dabdub D., Weber R J., Huebert B., Clarke A D., Guazzotti S A., Sodeman D A., Prather K A., Uno I., Woo J H., Streets D G., Quinn P K., Johnson J E., Song C H., Sandu A., Talbot R W., Dibb J E.,
"Three-dimensional studies of aerosol ions and their size distribution in East Asia during spring 2001",
Journal of Geophysical Research, vol. 109, no. D19, 2004.
Tagged BibTex xml
Feig M., Onufriev A., Lee M S., Im W., Case D A., Brooks. C L.,
"Performance Comparison of Generalized Born and Poisson Methods in the Calculation of Electrostatic Solvation Energies for Protein Structures",
Journal of Computational Chemistry , vol. 468, pp. 96–111, 2004.
Tagged BibTex xml
Goncalves M A., Fox E A., Watson L T., Kipp N A.,
"Streams, structures, spaces, scenarios, societies (5S): a formal model for digital libraries",
ACM Trans. Infor. Systems, vol. 22, pp. 270–312, 2004.
Tagged BibTex xml
Goncalves M A., Fox E A., Watson L T., Kipp N A.,
"Streams, structures, spaces, scenarios, societies (5S): a formal model for digital libraries",
ACM Trans. Infor. Systems, vol. 22, pp. 270–312, 2004.
Tagged BibTex xml
Schutte J., Haftka R T., Watson L T.,
"Decomposition and two-level optimization of structures with discrete sizing variables",
AIAA Paper 2004–1541, in Proc. AIAA/ASME/- ASCE/AHS/ASC 45th Structures, Structural Dynamics, and Materials Conf., CD-ROM, Palm Springs, CA, pp. 5 pages, 2004.
Tagged BibTex xml
Agarwal H., Lee J C., Watson L T., Renaud J E.,
"A unilevel method for reliability based design optimization",
Proc. AIAA/ASME/ASCE/AHS/ASC 45th Structures, Structural Dynamics, and Materials Conf., CD-ROM, Palm Springs, CA, pp. 19 pages, 2004.
Tagged BibTex xml
Setoodeh S., Gurdal Z., Abdalla M., Watson L T.,
"Design of variable stiffness composite laminates for maximum bending stiffness",
AIAA Paper 2004–4528, in Proc. 10th AIAA/ISSMO Multidisciplinary Analysis and Optimization Conf., CD-ROM, Albany, NY, pp. 8 pages, 2004.
Tagged BibTex xml
Adams D B., Setoodeh S., Watson L T., Gurdal Z.,
"Pipeline implementation of cellular automata for structural design on message-passing multiprocessors",
AIAA Paper 2004–4444, in Proc. 10th AIAA/ISSMO Multidisciplinary Analysis and Optimization Conf., CD-ROM, Albany, NY, pp. 9 pages, 2004.
Tagged BibTex xml
Gantovnik V., Gurdal Z., Watson L T.,
"Linear Shepard interpolation for high dimensional piecewise smooth functions",
AIAA Paper 2004–4486, in Proc. 10th AIAA/ISSMO Multidisciplinary Analysis and Optimization Conf., CD-ROM, Albany, NY, 2004.
Tagged BibTex xml
Seresta O., Gurdal Z., Watson L T.,
"Optimal design of composite wing structure with blended laminates",
AIAA Paper 2004–4349, in Proc. 10th AIAA/ISSMO Multidisciplinary Analysis and Optimization Conf., CD-ROM, Albany, NY, pp. 13 pages, 2004.
Tagged BibTex xml
Agarwal H., Renaud J E., Perez V M., Watson L T.,
"Homotopy methods for constraint relaxation in unilevel reliability based design optimization",
AIAA Paper 2004–4402, in Proc. 10th AIAA/ISSMO Multidisciplinary Analysis and Optimization Conf., CD-ROM, Albany, NY, pp. 12 pages, 2004.
Tagged BibTex xml
Tadepalli S., Ribbens C.J., Varadarajan S.,
"GEMS: A job management system for fault tolerant grid computing",
Proceedings High Performance Computing Symposium 2004, San Diego, CA, J. Meyer (ed.), Soc. for Modeling and Simulation Internat., pp. 59-66, 2004.
Tagged BibTex xml
2003
Verstak A., Ramakrishnan N., Watson L.T., He J., Shaffer C.A., Bae K., Jiang J., Tranter W.H., Rappaport T.S.,
"BSML: A binding schema markup language for data interchange in problem solving environments",
Sci. Program., vol. 11, no. 3, Amsterdam, The Netherlands, The Netherlands, IOS Press, pp. 199–224, 2003.
Tagged BibTex xml
Allen N., Calzone L., Chen K C., Ciliberto A., Ramakrishnan N., Shaffer C A., Sible J C., Tyson J J., Vass M., Watson L T., Zwolak J.,
"Modeling Regulatory Networks at Virginia Tech",
Omics Journal of Integrative Biology, vol. Vol. 7, no. 3, pp. pages 285–300, Fall, 2003.
Tagged BibTex xml
Sandu A., Negrut D., Sandu C., Haug E J., Potra F A.,
"Rosenbrock Nystrom integrator for SSODE of mechanical systems",
Proceedings of ASME International (DETC-2003), no. VIB-48329, pp. 8, September 6-10, 2003.
Tagged BibTex xml
Sandu A., Borden C T.,
"Discretization of aerosol dynamics with B-splines",
ACM Symposium on Applied Computing (SAC-2003), pp. 189–193, March 13-18, 2003.
Tagged BibTex xml
Sandu A.,
"Computational Sciences track editorial",
{ACM Symposium on Applied Computing (SAC-2003)}, pp. 141–142, March 13-18, 2003.
Tagged BibTex xml
Sandu A., Daescu D N., Chai T., Carmichael G R., Seinfeld J H., Hess P G., Anderson T L., Darema F.,
"Computational aspects of 4D-Var chemical data assimilation in atmospheric models",
Dynamic Data Driven Applications Systems: Kluwer Academic Publishers, 2003.
Tagged BibTex xml
Sandu A., Negrut D., Haug E J., Potra F A., Sandu C.,
"A Rosenbrock-Nystrom state space implicit method for the dynamic analysis of mechanical systems: I – Theoretical development",
Journal of Multibody Dynamics, vol. 217, no. K4, pp. 263–272, 2003.
Tagged BibTex xml
Negrut D., Sandu A., Haug E J., Potra F A., Sandu C.,
"A Rosenbrock-Nystrom state space implicit method for the dynamic analysis of mechanical systems: II – The Method and numerical results",
Journal of Multibody Dynamics, vol. 217, no. K4, pp. 273–282, 2003.
Tagged BibTex xml
Allawi H T., Kaiser M W., Onufriev A., Ma W., Brogaard A E., Case D A., Neri B P., Lyamichev V I.,
"Modeling of Flap Endonuclease Interactions with DNA Substrate.",
Journal of Molecular Biology, vol. 328, pp. 537–554, 2003.
Tagged BibTex xml
Dymond R., Lohani V., Kibler D., Bosch D., Rubin E J., Dietz R., Chanat J., Speir C., Shaffer C A., Ramakrishnan N., Watson L T.,
"From landscapes to waterscapes: a PSE for landuse change analysis",
Engrg. Computers, vol. 19, pp. 9–25, 2003.
Tagged BibTex xml
Perez V M., J. E. Renaud, Watson L T.,
"Homotopy curve tracking in approximate interior point optimization",
AIAA Paper 2003–1670, in Proc. AIAA/ASME/ASCE/AHS 44th Structures, Structural Dynamics, and Materials Conf., CD-ROM, Norfolk, VA, pp. 11 pages, 2003.
Tagged BibTex xml
Gantovnik V B., Gurdal Z., Watson L T., Anderson-Cook C.,
"A genetic algorithm for mixed nonlinear programming problems using separate constraint approximations",
AIAA Paper 2003–1700, in Proc. AIAA/ASME/ASCE/AHS 44th Structures, Structural Dynamics, and Materials Conf., CD-ROM, Norfolk, VA, pp. 7 pages, 2003.
Tagged BibTex xml
Zwolak J W., Tyson J J., Watson L T.,
"Finding all steady state solutions of chemical kinetic models",
Proc. High Performance Computing Symposium 2003, I. Banicescu (ed.), Soc. for Modeling and Simulation Internat., San Diego, CA, pp. 47-53, 2003.
Tagged BibTex xml
Ribbens C.J.,
"High performance computing",
Virginia Tech Scholarly Review, pp. 11-15, 2003.
Tagged BibTex xml
Bora P., Ribbens C.J., Prabhakar S., Swaminathan G., Chinnusamy M., Jeyakumar A., Acosta D.B.,
"Issues in runtime algorithm selection for grid environments",
Proceedings of the International Workshop on Challenges of Large Applications in Distributed Environments, Los Alamitos, CA, I. Banicescu (ed.), IEEE Press, pp. 80–87, 2003.
Tagged BibTex xml
Ribbens C.J., Bora P., Ventra D.M., Hauck J., Prabhakar S., Taylor C.,
"From cluster to Grid: a case study in scaling-up a molecular electronics simulation code",
Proceedings of the High Performance Computing Symposium 2003, San Diego, I. Banicescu (ed.), Society for Modeling and Simulation International, pp. 54-62, 2003.
Tagged BibTex xml
2002
He J., Watson L.T., Ramakrishnan N., Shaffer C.A., Verstak A., Jiang J., Bae K., Tranter W.H.,
"Dynamic Data Structures for a Direct Search Algorithm",
Comput. Optim. Appl., vol. 23, no. 1, Norwell, MA, USA, Kluwer Academic Publishers, pp. 5–25, 2002.
Tagged BibTex xml
Watson L T., Lohani V K., Kibler D F., Dymond R L., Ramakrishnan N., Shaffer C A.,
"Integrated Computing Environments for Watershed Management",
ASCE Journal of Computing in Civil Engineering, vol. 16, no. 4, pp. 259–268, October, 2002.
Tagged BibTex xml
Ramakrishnan N., Watson L T., Kafura D G., Ribbens C.J., Shaffer C A.,
"Programming Environments for Multidisciplinary Grid Communities",
Concurrency and Computation: Practice and Experience, vol. 13–15, pp. 1241–1273, Nov–December, 2002.
Tagged BibTex xml
Sandu A., Daescu D., Carmichael G R.,
"Adjoint data assimilation for aerosol dynamics",
Proceedings of the second International Conference on Air Polution Modeling and Simulation (APMS-2001), pp. 319–331, 2002.
Tagged BibTex xml
Watson L T., Lohani V K., Kibler D F., Dymond R L., Ramakrishnan N., Shaffer C A.,
"Integrated computing environments for watershed management",
J. Comput. Civil Engrg., vol. 16, pp. 259–268, 2002.
Tagged BibTex xml
Kim H., Mason W H., Watson L T., Grossman B., Papila M., Haftka R T.,
"Protection against modeling and uncertainties in design optimization",
Modeling and Simulation-Based Life Cycle Engineering, Spon Press, London, 2002, pp. 231–246, 2002.
Tagged BibTex xml
Zwolak J W., Tyson J J., Watson L T.,
"Parameter estimation in a cell cycle model for frog egg extracts",
Proc. High Performance Computing Symposium 2002, A. Tentner (ed.), Soc. for Modeling and Simulation Internat., San Diego, CA, pp. 67-74, 2002.
Tagged BibTex xml
Adams D B., Watson L T., Gurdal Z.,
"Blending of composite panel designs using genetic algorithms",
Proc. 16th Internat. Parallel & Distributed Processing Symp., CD-ROM, IEEE Computer Soc., Los Alamitos, CA, pp. 6 pages, 2002.
Tagged BibTex xml
Gantovnik V B., Gurdal Z., Watson L T.,
"Genetic algorithm with memory for optimal design of laminated sandwich composite panels",
AIAA Paper 2002–1221, in Proc. AIAA/- ASME/ASCE/AHS/ASC 43rd Structures, Structural Dynamics, and Materials Conf., CD-ROM, Denver, CO, pp. 8 pages, 2002.
Tagged BibTex xml
Gantovnik V B., Gurdal Z., Watson L T.,
"Genetic algorithm with memory for optimal design of laminated sandwich composite panels",
AIAA Paper 2002–1221, in Proc. AIAA/- ASME/ASCE/AHS/ASC 43rd Structures, Structural Dynamics, and Materials Conf., CD-ROM, Denver, CO, pp. 8 pages, 2002.
Tagged BibTex xml
Kim H., Papila M., Haftka R T., Mason W H., L. T. Watson, Grossman B.,
"Estimating optimization error statistics via optimization runs from multiple starting points",
AIAA Paper 2002–5576, in Proc. 9th AIAA/ISSMO Symp. on Multidisciplinary Analysis and Optimization, CD-ROM, Atlanta, GA, pp. 14 pages, 2002.
Tagged BibTex xml
Perez V M., Renaud J E., Watson L T.,
"An interior point sequential approximate optimization methodology",
AIAA Paper 2002–5505, in Proc. 9th AIAA/ISSMO Symp. on Multidisciplinary Analysis and Optimization, CD-ROM, Atlanta, GA, pp. 12 pages, 2002.
Tagged BibTex xml
Cox S E., Hart W E., Haftka R T., Watson L T.,
"DIRECT algorithm with box penetration for improved local convergence",
AIAA Paper 2002–5581, in Proc. 9th AIAA/ISSMO Symp. on Multidisciplinary Analysis and Optimization, CD-ROM, Atlanta, GA, pp. 15 pages, 2002.
Tagged BibTex xml
Prabhakar S., Ribbens C., Bora P.,
"Multifaceted web services: an approach to secure and scalable grid scheduling",
The Web and the GRID: from e-science to e-business, Proceedings of Euroweb 2002, Swindon, UK, B. Matthews, B. Hopgood, M. Wilson (eds.) British Computer Society, pp. 116–125, 2002.
Tagged BibTex xml
2001
Duff J F., Merkey P., Sandu A.,
"Parallel molecular dynamics using MPI on a Scyld-style Beowulf cluster",
Proceedings of the 10th SIAM Conference on Parallel Processing for Scientific Computing, pp. 272–279, 2001.
Tagged BibTex xml
Sandu A.,
A spectral method for solving aerosol dynamics,
, no. CSTR-01-04, 1400 Townsend Drive, Houghton, MI 49931, Department of Computer Science, Michigan Technological University, 2001.
Tagged BibTex xml
Goel A., Baker C A., Shaffer C A., Grossman B., Mason W H., Watson L T., Haftka R T.,
"VizCraft: a problem solving environment for configuration design of a high speed civil transport",
Comput. Sci. Engrg., vol. 3, pp. 56–66, 2001.
Tagged BibTex xml
Cox S E., Haftka R T., Baker C A., Grossman B., Mason W H., Watson L T.,
"Global multidisciplinary optimization of a high speed civil transport",
J. Global Optim., vol. 21, pp. 415–433, 2001.
Tagged BibTex xml
Kim H., Papila M., Mason W H., Haftka R T., Watson L T., Grossman B.,
"“Detection and repair of poorly converged optimization runs",
AIAA J., vol. 39, pp. 2242–2249, 2001.
Tagged BibTex xml
Hosder S., Watson L T., Grossman B., Mason W H., Kim H., Haftka R T., Cox S.,
"Polynomial response surface approximations for the multidisciplinary design optimization of a high speed civil transport",
Optim. Engrg., vol. 2, pp. 431–452, 2001.
Tagged BibTex xml
Watson L T.,
"Globally convergent homotopy methods",
Encyclopedia of Optimization, Kluwer, Norwell, MA, A. Floudas and P. M. Pardalos (eds.), 2001.
Tagged BibTex xml
Watson L T.,
"Multidisciplinary design optimization",
Encyclopedia of Optimization, Kluwer, Norwell, MA, C. A. Floudas and P. M. Pardalos (eds.), 2001.
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Billups S C., Speight A L., Watson L T.,
"Nonmonotone path following methods for nonsmooth equations and complementarity problems",
Applications and Algorithms of Complementarity, M. C. Ferris, O. L. Mangasarian, and J.-S. Pang (eds.), Kluwer, Norwell, MA, 2001.
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Adams D B., Watson L T., Gurdal Z.,
"Global/local optimization and blending using genetic algorithms with migration",
Proc. 10th SIAM Conf. on Parallel Processing for Scientific Computing, CD-ROM, SIAM, Philadelphia, PA, pp. 8 pages, 2001.
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Watson L T., Baker C A.,
"A fully distributed parallel global search algorithm",
Proc. 10th SIAM Conf. on Parallel Processing for Scientific Computing, CD-ROM, SIAM, Philadelphia, PA, pp. 10 pages, 2001.
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Zwolak J W., Tyson J J., Watson L T.,
"Estimating rate constants in cell cycle models",
Proc. High Performance Computing Symposium 2001, A. Tentner (ed.), Soc. for Modeling and Simulation Internat., San Diego, CA, pp. 53–57, 2001.
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Gurdal Z., Watson L T.,
"Structural design using cellular automata",
Proc. Third Internat. Conf. on Intelligent Processing and Manufacturing of Materials, J. A. Meech, S. M. Veiga, M. M. Veiga, S. R. LeClair, and J. F. Maguire (eds.), CD-ROM, Vancouver, Canada, pp. 4 pages, 2001.
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Kohn S., Kumfert G., Painter J., Ribbens C.J.,
"Divorcing language dependencies from a scientific software library",
Proceedings of the Tenth SIAM Conference on Parallel Processing for Scientific Computing, Philadelphia, PA, C. Koelbel and J. Meza (eds.), SIAM, 2001.
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2000
Baker C A., Watson L T., Cox S E., Grossman B., Haftka R T., Mason W H.,
"Study of a global design space exploration method for aerospace vehicles",
Proc. 5th NASA High Performance Computing and Communications Computational Aerosciences Workshop, CD-ROM, Mountain View, CA, pp. 10 pages, 2000.
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Ragon S., Gurdal Z., Watson L T.,
"A comparison of three algorithms for tracing nonlinear equilibrium paths of structural systems",
Proc. AIAA/ASME/ASCE/AHS/ASC 41st Structures, Structural Dynamics, and Materials Conf., CD-ROM, Atlanta, GA, pp. 11 pages, 2000.
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Kim H., Papila M., Mason W H., Haftka R T., Watson L T., Grossman B.,
"Detection and correction of poorly converged optimizations by iteratively reweighted least squares",
AIAA Paper 2000-1525, in Proc. AIAA/ASME/ASCE/AHS/ASC 41st Structures, Structural Dynamics, and Materials Conf., CD-ROM, Atlanta, GA, 2000.
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Baker C A., Watson L T., Grossman B., Haftka R T., Mason W H.,
"Parallel global aircraft configuration design space exploration",
Proc. High Performance Computing Symposium 2000, A. Tentner (ed.), Soc. for Computer Simulation Internat., San Diego, CA, pp. 101–106, 2000.
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Cox S E., Haftka R T., Baker C., Grossman B., Mason W H., Watson L T.,
"Global optimization for noise and multiple local optima",
Proc. Internat. Workshop on Multidisciplinary Design Optim., Pretoria, South Africa, pp. 50–59, 2000.
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Kim H., Haftka R T., Mason W H., Watson L T., Grossman B.,
"A study of the statistical description of errors from structural optimization",
AIAA Paper 2000–4840–CP, in Proc. 8th AIAA/USAF/NASA/ISSMO Symp. on Multidisciplinary Analysis and Optimization, CD-ROM, Long Beach, CA, 2000.
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Baker C A., Watson L T., Grossman B., Haftka R T., Mason W H.,
"Parallel global aircraft configuration design space exploration",
AIAA Paper 2000–4763–CP, in Proc. 8th AIAA/USAF/NASA/ISSMO Symp. on Multidisciplinary Analysis and Optimization, CD-ROM, Long Beach, CA, 2000.
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Goel A., Phanouriou C., Kamke F A., Ribbens C.J., Shaffer C A., Watson L T.,
"WBCSim: A prototype PSE for wood-based composites simulations",
Enabling Technologies for Computational Science: Frameworks, Middleware and Environments, pp. 187-196, 2000.
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1999
Goel A., Phanouriou C., Kamke F A., Ribbens C.J., Shaffer C A., Watson L T.,
"WBCSim: A Prototype Problem Solving Environment for Wood-Based Composites Simulations",
Engineering with Computers, vol. 15, no. 2, pp. 198–210, 1999.
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Goel A., Baker C., Shaffer C A., Grossman B., Haftka R., Mason W., Watson L.,
"VizCraft: A Multidimensional Visualization Tool for Aircraft Configuration Design",
VISUALIZATION '99: Proceedings of the 10th IEEE Visualization 1999 Conference (VIS '99), Washington, DC, USA, IEEE Computer Society, 1999.
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Shaffer C A., Watson L T., Kafura D G.,
"Component Frameworks for Problem Solving Environments in Computational Science",
Proceedings of the 1st Symposium on Reusable Architectures and Components for Developing Distributed Information Systems (RACDIS'99), pp. 653–656, August, 1999.
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Carmichael G R., Sandu A., Song C H., He S., Phadnis M., Daescu D., Damian-Iordache V., Potra F A., Zlatev Z.,
"Computational challenges of modeling interactions between aerosol and gas phase processes",
NATO Advanced Study Institute on Computational Challenges in Air Pollution Modeling, pp. 99–136, 1999.
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Mateescu G., Ribbens C.J.,
"An Iterative Substructuring Preconditioner for Collocation with Hermite Bicubics",
Proceedings of the Eleventh International Conference on Domain Decomposition Methods, Bergen,, C-H Lai, P. E. Bjorstad, M. Cross, and O. Widlund, (eds.), DDM.org, pp. 73–81, 1999.
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1998
Shaffer C.A., Knill D.L., Watson L.T.,
"Visualization for multiparameter aircraft designs",
VIS '98: Proceedings of the conference on Visualization '98, Los Alamitos, CA, USA, IEEE Computer Society Press, pp. 491–494, 1998.
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1997
Embree M., Ribbens C.J.,
"On the scalability of parallel Krylov subspace methods",
Proceedings of the Eighth SIAM Conference on Parallel Processing for Scientific Computing, Philadelphia, SIAM, 1997.
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1996
Shaffer C.A., Heath L.S., Yang J.,
"Using the Swan data structure visualization system for computer science education",
SIGCSE '96: Proceedings of the twenty-seventh SIGCSE technical symposium on Computer science education, New York, NY, USA, ACM, pp. 140–144, 1996.
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Yang J., Shaffer C.A., Heath L.S.,
"SWAN: A Data Structure Visualization System",
GD '95: Proceedings of the Symposium on Graph Drawing, London, UK, Springer-Verlag, pp. 520–523, 1996.
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Jay L O., Sandu A., Potra F A., Carmichael G R., Kreuzer E., Mahrenholtz O.,
"Efficient Numerical Integration for Atmospheric Chemistry",
Special issue of ZAMM: Applied sciences, no. 4, pp. 450–453, 1996.
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Carmichael G R., Sandu A., Potra F A., Damian-Iordache V.,
"An overview of sensitivity analysis for atmospheric chemistry models via automatic differentiation",
Air Pollution IV - Monitoring, Simulation and Control, vol. B. Caussad, pp. Computational Mechanics Publications, Southampton, Boston, 1996.
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1995
1994
1993
1992
Ribbens C.J.,
"A moving mesh scheme for adaptive domain decomposition",
Unstructured Scientific Computation on Scalable Multiprocessors, Cambridge, MA, P. Mehrotra, J. Saltz, and R. Voigt (eds.), MIT Press, 1992.
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Ribbens C.J.,
"On adaptive domain decomposition with moving subdomains",
Fifth International Symposium on Domain Decomposition Methods for Partial Differential Equations, Philadelphia, D. Keyes, et al. (eds.), SIAM, 1992.
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Beattie C., Ribbens C.J.,
"Parallel solution of a generalized symmetric eigenvalue problem",
Parallel Processing for Scientific Computing, Philadelphia, J. Dongarra, et al. (eds.), SIAM, 1992.
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Ribbens C.J., Pitts G G.,
"Strategies for parallelizing PDE software",
Advances in Computer Methods for Partial Differential Equations VII, R. Vichnevetsky, New Brunswick, N.J., D. Knight, and G. Richter (eds.), IMACS, 1992.
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1991
Shaffer C A.,
Getting Around on a Sphere,
, San Diego, CA, USA, Academic Press Professional, Inc., 1991.
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1990
Shaffer C A.,
"A full resolution elevation representation requiring three bits per pixel",
SSD '90: Proceedings of the first symposium on Design and implementation of large spatial databases, New York, NY, USA, Springer-Verlag New York, Inc., pp. 45–64, 1990.
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1989
Ribbens C.J.,
"Parallelization of adaptive grid domain mappings",
Parallel Processing for Scientific Computing, Philadelphia, G. Rodrigue (ed.), SIAM, 1989.
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1988
1987
Ribbens C.J.,
"A priori grid adaption strategies for elliptic PDEs",
Advances in Computer Methods for Partial Differential Equations VI, R., New Brunswick, N.J., Vichnevetsky and R.S. Stepleman (eds.), IMACS,, 1987.
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1986
Shaffer C A.,
"An Empirical Comparison of Vectors, Rasters, and Quadtrees for Representing Geographic Data",
Proceedings of the International Colloquium on the Construction and Display of Geoscientific Maps Derived from Databases, Geologisches Jahrbuch A 104, pp. 99–115, December, 1986.
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Samet H., Shaffer C A., Nelson R C., Huang Y -G., Fujimura K., Rosenfeld A.,
"Hierarchical Data Structures for Geographic Information",
Proceedings of the International Colloquium on the Construction and Display of Geoscientific Maps Derived from Databases, Geologisches Jahrbuch A 104, pp. 97–98, December, 1986.
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1984