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"Reverse engineering dynamic temporal models of biological processes and their relationships",
Proc. National Academy of Sciences, vol. 107, pp. 12511-12516, 2010.
"Simultaneously segmenting multiple gene expression time courses by analyzing cluster dynamics",
J. Bioinformatics Comput. Biol., vol. 7, pp. 339-356, 2009.
"{Reconstructing Formal Temporal Models of Cellular Events using the GO Process Ontology}",
Proceedings of the Eighth Annual Bio-Ontologies Meeting (ISMB'05 Satellite Workshop), June, 2005.
"{Turning CARTwheels: An Alternating Algorithm for Mining Redescriptions}",
Proceedings of the Tenth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (KDD'04), pp. 266–275, Aug, 2004.
