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"Blended HMMs: Reducing Redundancy in the SCOP HMM Database",
The 13th International Conference on Bioinformatics and Computational Biology (BIOCOMP'12), 2012.
"Gene Selection for Cancer Classification by Multiple PCA with Sparsity",
Fourth International Conference on Bioinformatics and Computational Biology (BICoB-2012), Las Vegas, 2012.
"Metagenes Associated with Survival in Non- Small Cell Lung Cancer",
Cancer Informatics, vol. 10, 2011.
"A Network of Hidden Markov Models and Its Analysis",
2011 International Conference on Bioinformatics and Computational Biology (BIOCOMP'11), Las Vegas, Nevada, 2011.
"A Network of SCOP Hidden Markov Models and Its Analysis",
BMC Bioinformatics, vol. 12, pp. 11 pages, 2011.
"A new functional association-based protein complex prediction",
BIBM Workshop, Atlanta, 2011.
"Optimizing a Cost Matrix to Solve Rare-Class Biological Problems",
2011 International Conference on Bioinformatics and Computational Biology (BIOCOMP'11), Las Vegas, Nevada, 2011.
"Sindbis virus induces the production of a novel class of endogenous siRNAs in Aedes aegypti mosquitoes.",
Insect Molecular Biology, 2011.
"A Genome Compression Algorithm Supporting Manipulation",
9th Annual International Conference on Computational Systems Bioinformatics (CSB 2010), Stanford, California, pp. 38-49, 2010.
"MSOAR 2.0: Incorporating tandem duplications into ortholog assignment based on genome rearrangement",
BMC Bioinformatics, vol. 11, issue 1, pp. 10, 2010.
"The expected fitness cost of a mutation fixation under the one-dimensional Fisher model",
Internat. J. Pure Appl. Math., vol. 62, pp. 129--150, 2010.
"Functional bias in molecular evolution rate of Arabidopsis thaliana",
BMC Evolutionary Biology, vol. 10, no. 1, pp. 125, 2010.
Abstract
"Towards Constructing Disease Relationship Networks Using Genome-Wide Association Studies",
2010 4th International Conference on Bioinformatics and Biomedical Engineering (iCBBE)2010 4th International Conference on Bioinformatics and Biomedical Engineering, Chengdu, China, IEEE, pp. 1 - 6, 2010.
"Elucidating the Evolutionary Relationships among Bos taurus Digestive Organs Using Unigene Expression Data",
International Journal of Evolutionary Biology, vol. 2009, pp. 1 - 8, 2009.
"A Pattern Analysis of Gene Conversion Literature",
Comparative and Functional Genomics, vol. 2009, pp. 1 - 11, 2009.
"An Atlas of the Speed of Copy Number Changes in Animal Gene Families and Its Implications",
PLoS ONE, vol. 4, no. 10: Public Library of Science, pp. 13, 2009.
"Burst of Young Retrogenes and Independent Retrogene Formation in Mammals",
PLOS ONE, 2009.
"Expression Divergence of Tandemly Arrayed Genes in Human and Mouse",
Comparative and Functional Genomics, vol. 2007, pp. Article ID 60964, 8 pages, 2007.
