Biblio

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2012
Grene, R., C. Klumas, H. Suren, K. Yang, E. Collakova, E. Myers, L. S. Heath, and J. A. Holliday, "Mining and visualization of microarray and metabolomic data reveal extensive cell wall remodeling during winter hardening in Sitka spruce (Picea sitchensis)", Frontiers in Plant Science, vol. 3, pp. 14 pages, 2012.
Yang, K., L. S. Heath, and J. C. Setubal, "REGEN: Ancestral Genome Reconstruction for Bacteria", Genes, vol. 3, issue 4, pp. 423 - 443, 12/2012.
Zhou, L., C. Franck, K. Yang, G. Pilot, L. S. Heath, and R. Grene, "Mining for Meaning: Visualization Approaches to Deciphering Arabidopsis Stress Responses in Roots and Shoots", OMICS: A Journal of Integrative Biology, vol. 16, issue 4, pp. 208 - 228, 04/2012.
Liu, M., L. S. Heath, L. T. Watson, and L. Zhang, "Blended HMMs: Reducing Redundancy in the SCOP HMM Database", The 13th International Conference on Bioinformatics and Computational Biology (BIOCOMP'12), 2012.
Dias, Z., U. Dias, L. S. Heath, and J. C. Setubal, "Sorting genomes using almost-symmetric inversions", the 27th Annual ACM SymposiumProceedings of the 27th Annual ACM Symposium on Applied Computing - SAC '12, Trento, ItalyNew York, New York, USA, ACM Press, pp. 47-53, 2012.
2011
Pati, A., L. S. Heath, N. C. Kyrpides, and N. Ivanova, "ClaMS: A Classifier for Metagenomic Sequences", Standards in Genomic Sciences, vol. 5, pp. 248-253, 2011.
Heath, L. S., and N. Parikh, "Generating Random Graphs with Tunable Clustering Coefficient", Physica A, vol. 390, pp. 4577-4587, 2011.
Heath, L. S., and N. Parikh, "Generating Random Graphs with Tunable Clustering Coefficient", Physica A, vol. 390, pp. 4577-4587, 2011.
Zhang, L., L. T. Watson, and L. S. Heath, "A Network of Hidden Markov Models and Its Analysis", 2011 International Conference on Bioinformatics and Computational Biology (BIOCOMP'11), Las Vegas, Nevada, 2011.
Zhang, L., L. T. Watson, and L. S. Heath, "A Network of SCOP Hidden Markov Models and Its Analysis", BMC Bioinformatics, vol. 12, pp. 11 pages, 2011.
Lawson, M. J., L. S. Heath, H. Zhao, and L. Zhang, "Optimizing a Cost Matrix to Solve Rare-Class Biological Problems", 2011 International Conference on Bioinformatics and Computational Biology (BIOCOMP'11), Las Vegas, Nevada, 2011.
Heath, L. S., and N. Ramakrishnan, The Problem Solving Handbook for Computational Biology and Bioinformatics, , Berlin, Springer, pp. 347, 2011.
Belal, N. A., and L. S. Heath, "A Theoretical Model for Whole Genome Alignment", Journal of Computational Biology, vol. 18, no. 5, pp. 705-728, 2011.
2010
Sundaravaradan, N., J. P. C. Vergara, L. S. Heath, and N. Ramakrishnan, "Extracting Temporal Signatures for Comprehending Systems Biology Models", 16th ACM SIGKDD Conference on Knowledge Discovery and Data Mining (KDD-2010), Washington, DC, ACM, pp. 453-462, 2010.
Heath, L. S., A. -ping Hou, H. Xia, and L. Zhang, "A Genome Compression Algorithm Supporting Manipulation", 9th Annual International Conference on Computational Systems Bioinformatics (CSB 2010), Stanford, California, pp. 38-49, 2010.
Vasquez-Robinet, C., J. I. Watkinson, A. A. Sioson, N. Ramakrishnan, L. S. Heath, and R. Grene, "Differential Expression of Heat Shock Protein Genes in Preconditioning for Photosynthetic Acclimation in Water-Stressed Loblolly Pine", Plant Biochemistry and Physiology, vol. 48, pp. 256-264, 2010.
2009
Bhattacharjee, P., N. Ramakrishnan, L. S. Heath, and A. V. Onufriev, "Correlation Between Computed Equilibrium Secondary Structure Free Energy and siRNA Efficiency", IEEE International Conference on Bioinformatics and Biomedicine Workshop, Washington, DC, pp. pp. 351–351, 2009.
Heath, L. S., and A. A. Sioson, "Multimodal Networks: Structure and Operations", IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 6, pp. 321-332, 2009. Abstract
Heath, L. S., and A. A. Sioson, "Semantics of Multimodal Network Models", IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 6, pp. 271-280, 2009.
2008
Pati, A., Y. Jin, K. Klage, R. Helm, L. S. Heath, and N. Ramakrishnan, "CMGSDB: Integrating Heterogeneous Caenorhabditis elegans Data Sources Using Compositional Data Mining", Nucleic Acids Research, vol. 36, pp. D69-76, 2008.
Mane, S. P., C. Vasquez-Robinet, A. Ulanov, R. Schafleitner, L. Tincopa, A. Gaudin, G. Nomberto, C. Alvarado, C. Solis, L. A. Bolivar, et al., "Molecular and Physiological Adaptation to Prolonged Drought Stress in the Leaves of two Andean Potato Genotypes", Functional Plant Biology, vol. 35, pp. 669-688, 2008.
Watkinson, J. I., L. Hendricks, A. A. Sioson, L. S. Heath, H. J. Bohnert, and R. Grene, "Tuber Development Phenotypes in Adapted and Acclimated, Drought-stressed Solanum tuberosum ssp. andigena Have Distinct Expression Profiles of Genes Associated with Carbon Metabolism", Plant Physiology and Biochemistry, vol. 46, pp. pp. 34-45, 2008.
2007
Pati, A., and L. S. Heath, "Genomic signatures from DNA word graphs (poster)", Grace Hopper Celebration of Women in Computing, , 10/2007.
Mane, S. P., C. Vasquez-Robinet, A. A. Sioson, L. S. Heath, and R. Grene, "Early PLD$\alpha$-Mediated Events in Response to Progressive Drought Stress in Arabidopsis: A Transcriptome Analysis", Journal of Experimental Botany, vol. 58, pp. pp. 241-252, 2007.
Heath, L. S., and A. Pati, "Genomic Signatures from DNA Word Graphs", Proceedings of the Third International Symposium on Bioinformatics Research and Applications, ISBRA , vol. 4463, pp. pp. 317-328., 2007.