Biblio

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2009
Shaffer, C. A., J. W. Zwolak, R. Randhawa, and J. J. Tyson, "Modeling Molecular Regulatory Networks with JigCell and PET", Systems Biology, no. 500: Humana Press, pp. 81-111, 2009.
2007
Zwolak, J. W., P. T. Boggs, and L. T. Watson, "Algorithm 869: ODRPACK95: a weighted orthogonal distance regression code with bound constraints", ACM Trans. Math. Software, vol. 33, 2007.
2005
He, J., M. Sosonkina, L. T. Watson, A. Verstak, and J. W. Zwolak, "Data-distributed parallelism with dynamic task allocation for a global search algorithm", Proc. High Performance Computing Symposium 2005, M. Parashar and L. Watson (eds.), Soc. for Modeling and Simulation Internat.: San Diego, CA, pp. 164–172, 2005.
Zwolak, J. W., J. J. Tyson, and L. T. Watson, "Globally optimized parameters for a model of mitotic control in frog egg extracts", IEE Systems Biol., vol. 152, pp. 81-92, 2005.
Zwolak, J. W., J. J. Tyson, and L. T. Watson, "“Parameter estimation for a mathematical model of the cell cycle in frog eggs", J. Comput. Biology, vol. 12, pp. 48–63, 2005.
2004
Zwolak, J. W., J. J. Tyson, and L. T. Watson, "Finding all steady state solutions of chemical kinetic models", Nonlinear Anal.: Real World Appl., vol. 5, pp. 801-814, 2004.
He, J., M. Sosonkina, C. A. Shaffer, J. J. Tyson, L. T. Watson, J. W. Zwolak, and J. Meyer, "A Hierarchical Parallel Scheme for a Global Search Algorithm", Proceedings of the 2004 High Performance Computing Symposium (HPC'04): Society for Modeling and Simulation International, pp. 43–50, 2004.
2003
Allen, N., L. Calzone, K. C. Chen, A. Ciliberto, N. Ramakrishnan, C. A. Shaffer, J. C. Sible, J. J. Tyson, M. Vass, L. T. Watson, et al., "Modeling Regulatory Networks at Virginia Tech", Omics Journal of Integrative Biology, vol. Vol. 7, no. 3, pp. pages 285–300, Fall, 2003.
Zwolak, J. W., J. J. Tyson, and L. T. Watson, "Finding all steady state solutions of chemical kinetic models", Proc. High Performance Computing Symposium 2003, I. Banicescu (ed.), Soc. for Modeling and Simulation Internat., San Diego, CA, pp. 47-53, 2003.
2002
Zwolak, J. W., J. J. Tyson, and L. T. Watson, "Parameter estimation in a cell cycle model for frog egg extracts", Proc. High Performance Computing Symposium 2002, A. Tentner (ed.), Soc. for Modeling and Simulation Internat., San Diego, CA, pp. 67-74, 2002.
2001
Zwolak, J. W., J. J. Tyson, and L. T. Watson, "Estimating rate constants in cell cycle models", Proc. High Performance Computing Symposium 2001, A. Tentner (ed.), Soc. for Modeling and Simulation Internat., San Diego, CA, pp. 53–57, 2001.