Biblio

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2009
Cao, Y., and D. C. Samuels, "DISCRETE STOCHASTIC SIMULATION METHODS FOR CHEMICALLY REACTING SYSTEMS", METHODS IN ENZYMOLOGY: COMPUTER METHODS, VOL 454, PT A, vol. 454, no. Part A, 525 B STREET, SUITE 1900, SAN DIEGO, CA 92101-4495 USA, ELSEVIER ACADEMIC PRESS INC, pp. 115-140, 2009. Abstract
Kang, P., Y. Cao, N. Ramakrishnan, C. J. Ribbens, and S. Varadarajan, "Modular Implementation of Adaptive Decisions in Stochastic Simulations", Proceedings of the 24th Annual ACM Symposium on Applied Computing (SAC'09): ACM, New York, pp. 995-1001, 2009.
2008
Barik, D., M. R. Paul, W. T. Baumann, Y. Cao, and J. J. Tyson, "Stochastic simulation of enzyme-catalyzed reactions with disparate timescales", BIOPHYSICAL JOURNAL, vol. 95, no. 8, 600 TECHNOLOGY SQUARE, 5TH FLOOR, CAMBRIDGE, MA 02139 USA, CELL PRESS, pp. 3563-3574, OCT 15, 2008. Abstract
Li, H., Y. Cao, L. R. Petzold, and D. T. Gillespie, "Algorithms and software for stochastic simulation of biochemical reacting systems", BIOTECHNOLOGY PROGRESS, vol. 24, no. 1, 1155 16TH ST, NW, WASHINGTON, DC 20036 USA, AMER CHEMICAL SOC, pp. 56-61, JAN-FEB, 2008. Abstract
Wang, P., R. Randhawa, C. A. Shaffer, Y. Cao, and W. T. Baumann, "Converting Macromolecular Regulatory Models from Deterministic to Stochastic Formulation", Proceedings of High Performance Computing and Simulation 2008 (HPCS 2008), pp. 385–392, April, 2008.
Cao, Y., and L. Petzold, "Slow-scale tau-leaping method", COMPUTER METHODS IN APPLIED MECHANICS AND ENGINEERING, vol. 197, no. 43-44, PO BOX 564, 1001 LAUSANNE, SWITZERLAND, ELSEVIER SCIENCE SA, pp. 3472-3479, 2008. Abstract
2007
Cao, Y., D. T. Gillespie, and L. R. Petzold, "Adaptive explicit-implicit tau-leaping method with automatic tau selection", JOURNAL OF CHEMICAL PHYSICS, vol. 126, no. 22, CIRCULATION & FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1, MELVILLE, NY 11747-4501 USA, AMER INST PHYSICS, JUN 14, 2007. Abstract
2006