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Hossain, T. K. S. M., D. Patnaik, S. Laxman, P. Jain, C. Bailey-Kellogg, and N. Ramakrishnan, "Improved Multiple Sequence Alignments Using Coupled Pattern Mining", IEEE/ACM Trans. Comput. Biol. Bioinformatics, vol. 10, no. 5, Los Alamitos, CA, USA, IEEE Computer Society Press, pp. 1098–1112, sep, 2013.
Hossain, M. S., N. Ramakrishnan, C. Bailey-Kellogg, and A. Friedman, "Using physicochemical properties of amino acids to induce graphical models of residue couplings", Proceedings of the Tenth International Workshop on Data Mining in Bioinformatics, New York, NY, USA, ACM, pp. 3:1–3:10, 06/2011.
Thomas, J., N. Ramakrishnan, and C. Bailey-Kellogg, "Graphical Models of Residue Coupling in Protein Families", IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 5, no. 2, 06/2008.