Biblio

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2007
Mongan, J., C. Simmerling, J. A. McCammon, D. A. Case, and A. Onufriev, "Generalized Born Model with a Simple, Robust Molecular Volume Correction", J. Chem. Theory and Comput, vol. 3, pp. 156-169, 2007.
2005
Case, D. A., T. Darden, T. Cheatham, H. Gohlke, K. Merz, A. Onufriev, R. Luo, and R. Woods, "The Amber Bio-molecular Simulation Programs", Journal of Computational Chemistry , vol. 26, pp. 1668-1688, 2005.
2004
Onufriev, A., D. Bashford, and D. A. Case, "Exploring protein native states and large-scale conformational changes with a modified Generalized Born model", Proteins, vol. 55, pp. 383-394, 2004.
Feig, M., A. Onufriev, M. S. Lee, W. Im, D. A. Case, and C. L. Brooks., "Performance Comparison of Generalized Born and Poisson Methods in the Calculation of Electrostatic Solvation Energies for Protein Structures", Journal of Computational Chemistry , vol. 468, pp. 96–111, 2004.
2003
Allawi, H. T., M. W. Kaiser, A. Onufriev, W. - P. Ma, A. E. Brogaard, D. A. Case, B. P. Neri, and V. I. Lyamichev, "Modeling of Flap Endonuclease Interactions with DNA Substrate.", Journal of Molecular Biology, vol. 328, pp. 537–554, 2003.
Onufriev, A., D. A. Case, and D. Bashford, "Structural details, pathways, and energetics of unfolding apomyoglobin", Journal of Molecular Biology, vol. 325, pp. 555–567, 2003.
2002
Onufriev, A., D. Bashford, and D. A. Case, "The Generalized Born Approximation: The Importance of Being Perfect", Journal of Computational Chemistry , vol. 23, 2002.
2001
Onufriev, A., D. A. Case, and G. M. Ullmann, "A Novel View of pH Titration in Biomolecules.", Biochemistry , vol. 40, 2001.
2000
Onufriev, A., D. A. Case, and D. Bashford, "A Modification of the Generalized Born Model Suitable for Macromolecules", Journal of Physical Chemistry B , vol. 104, 2000.