Biblio

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2006
Thomas, E., L. Thomas, C. A. Shaffer, and L. Mili, "Using External High-Resolution Log Scanning to Determine Internal Defect Characteristics", Proceedings of the 15th Central Hardwood Forestry Conference, pp. 497–505, February, 2006.
Vass, M., C. A. Shaffer, N. Ramakrishnan, L. T. Watson, and J. J. Tyson, "The JigCell Model Builder: A Spreadsheet Interface for Creating Biochemical Reaction Network Models", IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. Vol. 3, no. 2, pp. 155–164, April-June, 2006.
Sauro, H. M., D. Harel, M. Kwiatkowska, C. A. Shaffer, A. M. Uhrmacher, M. Hucka, P. Mendes, L. Strömback, and J. J. Tyson, "Challenges for modeling and simulation methods in systems biology", WSC '06: Proceedings of the 38th conference on Winter simulation: Winter Simulation Conference, pp. 1720–1730, 2006.
Panning, T. D., L. T. Watson, N. A. Allen, C. A. Shaffer, and J. J. Tyson, "Deterministic Global Parameter Estimation for a Budding Yeast Model", Proceedings of the 2006 High Performance Computing Symposium (HPC'06), pp. 195–201, 2006.
Shaffer, C. A., "Experiences teaching a graduate research methods course", SIGCSE Bulletin, vol. 38, no. 2, New York, NY, USA, ACM, pp. 97–101, 2006.
Shaffer, C. A., R. Randhawa, and J. J. Tyson, "The role of composition and aggregation in modeling macromolecular regulatory networks", WSC '06: Proceedings of the 38th conference on Winter simulation: Winter Simulation Conference, pp. 1628–1636, 2006.
2005
Allen, N. A., C. A. Shaffer, and L. T. Watson, "Building modeling tools that support verification, validation, and testing for the domain expert", WSC '05: Proceedings of the 37th conference on Winter simulation: Winter Simulation Conference, pp. 419–426, 2005.
2004
Thomas, L., L. Mili, C. A. Shaffer, and E. Thomas, "Defect Detection on Hardwood Logs Using High Resolution Three-dimensional Laser Scan Data", IEEE International Conference on Image Processing, ICIP, pp. 243–246, October, 2004.
Saraiya, P., C. A. Shaffer, D. S. McCrickard, and C. North, "Effective features of algorithm visualizations", Proceedings of the 35th SIGCSE technical symposium on Computer Science Education (SIGCSE 2004), Norfolk, Virginia, USA, pp. 382 - 386, March 2004.
Shaffer, C. A., "Buffer pools and file processing projects for an undergraduate data structures course", SIGCSE '04: Proceedings of the 35th SIGCSE technical symposium on Computer science education, New York, NY, USA, ACM, pp. 175–178, 2004.
He, J., M. Sosonkina, C. A. Shaffer, J. J. Tyson, L. T. Watson, J. W. Zwolak, and J. Meyer, "A Hierarchical Parallel Scheme for a Global Search Algorithm", Proceedings of the 2004 High Performance Computing Symposium (HPC'04): Society for Modeling and Simulation International, pp. 43–50, 2004.
Vass, M., N. Allen, C. A. Shaffer, N. Ramakrishnan, L. T. Watson, and J. J. Tyson, "The JigCell Model Builder and Run Manager", Bioinformatics, vol. 20, no. 18, Oxford, UK, Oxford University Press, pp. 3680–3681, 2004.
2003
Thomas, E., L. Thomas, L. Mili, R. Ehrich, A. L. Abott, and C. A. Shaffer, "Primary Detection of Hardwood Log Defects Using Laser Surface Scanning", Proceedings of Machine Vision Applications in Industrial Inspection XI, Volume 5022: SPIE, pp. 39–48, January, 2003.
Allen, N., L. Calzone, K. C. Chen, A. Ciliberto, N. Ramakrishnan, C. A. Shaffer, J. C. Sible, J. J. Tyson, M. Vass, L. T. Watson, et al., "Modeling Regulatory Networks at Virginia Tech", Omics Journal of Integrative Biology, vol. Vol. 7, no. 3, pp. pages 285–300, Fall, 2003.
Allen, N. A., C. A. Shaffer, M. T. Vass, N. Ramakrishnan, and L. T. Watson, "Improving the development process for eukaryotic cell cycle models with a modeling support environment", WSC '03: Proceedings of the 35th conference on Winter simulation: Winter Simulation Conference, pp. 782–790, 2003.
2002