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"Continuous iterative guided spectral class rejection classification algorithm",
IEEE Trans. Geoscience Remote Sensing, vol. 50, pp. 2303--2317, 2012.
"Scatter/gather clustering: flexibly incorporating user feedback to steer clustering results",
IEEE Trans. Visualization Computer Graphics, vol. 18, pp. 2829--2838, 2012.
"Computational steering in the problem solving environment WBCSim",
Engrg. Comput., vol. 28, pp. 888--911, 2011.
"Differential Expression of Heat Shock Protein Genes in Preconditioning for Photosynthetic Acclimation in Water-Stressed Loblolly Pine",
Plant Physiology and Biochemistry, vol. 48, no. 4, 04/2010.
"Differential Expression of Heat Shock Protein Genes in Preconditioning for Photosynthetic Acclimation in Water-Stressed Loblolly Pine",
Plant Biochemistry and Physiology, vol. 48, pp. 256-264, 2010.
"Dynamic tuning of algorithmic parameters of parallel scientific codes",
International Conference on Computational Science (ICCS 2010), Amsterdam, Elsevier, pp. 145-153, 2010.
"Reverse engineering dynamic temporal models of biological processes and their relationships",
Proc. National Academy of Sciences, vol. 107, pp. 12511-12516, 2010.
"Capturing Truthiness: Mining Truth Tables in Binary Datasets",
Proceedings of the 24th Annual ACM Symposium on Applied Computing (SAC'09; Data Mining Track): ACM, pp. 1467–1474, March, 2009.
"Discovering Excitatory Networks from Discrete Event Streams with Applications to Neuronal Spike Train Analysis",
Proceedings of the 9th IEEE International Conference on Data Mining (ICDM'09), Miami, FL, pp. 407-416, 12/2009.
"Accelerator-Oriented Algorithm Transformation for Temporal Data Mining",
Proceedings of 6th IFIP International Con- ference on Network and Parallel Computing (NPC'09), Gold Coast, Australia, 10/2009.
"Recommender Systems for the Conference Paper Assignment Problem",
Proceedings of the 3rd ACM Conference on Recommender Systems (RecSys'09), New York, NY, pp. 357-360, 10/2009.
"Graphical Models of Protein-Protein Interaction Speci city from Correlated Mutations and Interaction Data",
Proteins: Structure, Function, and Bioinformatics, vol. Vol. 76, pp. 911-929, 09/2009.
"Temporal Process Discovery in many Guises",
IEEE Computer, vol. Vol. 42, pp. 97-101, 08/2009.
"A Hypothesis Test for the Evaluation of Soft Clusters in Classi cation",
Proceedings of the International Conference on Image Processing, Computer Vision, and Pattern Recognition (IPCV'09), Las Vegas, NV, pp. 672-678, 07/2009.
"An Iterative Framework for the Improvement of Soft Clusters for Classi cation",
Proceedings of the International Conference on Image Processing, Computer Vision and Pattern Recognition , Las Vegas, NV, 07/2009.
"Protein Design by Sampling an Undirected Graphical Model of Residue Constraints",
IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. Vol. 6, pp. 506-516, 07/2009.
"Sustainable Operation and Management of Data Center Chillers using Temporal Data Mining",
Proceedings of the 15th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (KDD'09), Paris, France, pp. 1305-1314, 06/2009.
"A hypothesis test for the evaluation of soft clusters for classification",
Proc. 2009 Internat. Conf. on Image Processing, Computer Vision, and Pattern Recognition, Vol. 2, CD-ROM, H. R. Arabnia and G. Schaefer (eds.), USA, CSREA Press, 2009.
Abstract
"An iterative framework for the improvement of soft clusters for classification",
Proc. 2009 Internat. Conf. on Image Processing, Computer Vision, and Pattern Recognition, Vol. 2, CD-ROM, H. R. Arabnia and G. Schaefer (eds.), USA, CSREA Press, 2009.
"Modular, Fine-grained Adaptation of Parallel Programs",
International Conference on Computational Science (ICCS 2009): Springer, Heidelberg, pp. 269-279, 2009.
"Simultaneously segmenting multiple gene expression time courses by analyzing cluster dynamics",
J. Bioinformatics Comput. Biol., vol. 7, pp. 339-356, 2009.
"Compositional Mining of Multi-relational Biological Datasets",
ACM Transactions on Knowledge Discovery from Data, vol. 2, no. 1, March, 2008.
"Unification of problem solving environment implementation layers with XML-based specifications",
Advances in Engineering Software, vol. 39, no. 3, pp. 189-201, March, 2008.
"A Digital Library for Recovery, Research, and Learning from April 16, 2007 at Virginia Tech",
Traumatology, vol. 14, no. 1, pp. 20 pages, April, 2008.
"CMGSDB: Integrating Heterogeneous Caenorhabditis elegans Data Sources Using Compositional Data Mining",
Nucleic Acids Research, vol. 36, pp. D69-76, 2008.