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"ClaMS: A Classifier for Metagenomic Sequences",
Standards in Genomic Sciences, vol. 5, pp. 248-253, 2011.
"CMGSDB: Integrating Heterogeneous Caenorhabditis elegans Data Sources Using Compositional Data Mining",
Nucleic Acids Research, vol. 36, pp. D69-76, 2008.
"Molecular and Physiological Adaptation to Prolonged Drought Stress in the Leaves of two Andean Potato Genotypes",
Functional Plant Biology, vol. 35, pp. 669-688, 2008.
"Genomic signatures from DNA word graphs (poster)",
Grace Hopper Celebration of Women in Computing, , 10/2007.
"Genomic Signatures from DNA Word Graphs",
Proceedings of the Third International Symposium on Bioinformatics Research and Applications, ISBRA , vol. 4463, pp. pp. 317-328., 2007.
"Genomic Signatures in de Bruijn Chains",
Proceedings of the Workshop on Algorithms in Bioinformatics (WABI), vol. 4645, pp. pp. 216-227. , 2007.
"Predicting Markov Chain Order in Genomic Sequences",
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine (BIBM): IEEE Computer Society Press, 2007.
"XcisClique: Analysis of Regulatory Bicliques",
BMC Bioinformatics, vol. 7, pp. 14 pages in main article; plus 16 pages in 7 additional files, 2006.
"XcisClique: Analyzing Regulatory Bicliques in Arabidopsis thaliana (Poster)",
8th Annual Conference on Computational Genomics , Cambridge, MA,, 11/2005.
