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"Mining and visualization of microarray and metabolomic data reveal extensive cell wall remodeling during winter hardening in Sitka spruce (Picea sitchensis)",
Frontiers in Plant Science, vol. 3, pp. 14 pages, 2012.
"Mining for Meaning: Visualization Approaches to Deciphering Arabidopsis Stress Responses in Roots and Shoots",
OMICS: A Journal of Integrative Biology, vol. 16, issue 4, pp. 208 - 228, 04/2012.
"Differential Expression of Heat Shock Protein Genes in Preconditioning for Photosynthetic Acclimation in Water-Stressed Loblolly Pine",
Plant Biochemistry and Physiology, vol. 48, pp. 256-264, 2010.
"Molecular and Physiological Adaptation to Prolonged Drought Stress in the Leaves of two Andean Potato Genotypes",
Functional Plant Biology, vol. 35, pp. 669-688, 2008.
"Tuber Development Phenotypes in Adapted and Acclimated, Drought-stressed Solanum tuberosum ssp. andigena Have Distinct Expression Profiles of Genes Associated with Carbon Metabolism",
Plant Physiology and Biochemistry, vol. 46, pp. pp. 34-45, 2008.
"Early PLD$\alpha$-Mediated Events in Response to Progressive Drought Stress in Arabidopsis: A Transcriptome Analysis",
Journal of Experimental Botany, vol. 58, pp. pp. 241-252, 2007.
"The Statistics of Identifying Differentially Expressed Genes in Expresso and TM4: A Comparison",
BMC Bioinformatics , vol. 7, pp. 15 pages in main article; plus 5 pages in 2 additional files. , 2006.
"XcisClique: Analysis of Regulatory Bicliques",
BMC Bioinformatics, vol. 7, pp. 14 pages in main article; plus 16 pages in 7 additional files, 2006.
"XcisClique: Analyzing Regulatory Bicliques in Arabidopsis thaliana (Poster)",
8th Annual Conference on Computational Genomics , Cambridge, MA,, 11/2005.
"Effects of Drought Stress on Phospholipid Signaling in Arabidopsis (Poster)",
InterDrought-II, The Second International Conference on Integrated Approaches to Sustain and Improve Plant Production Under Drought Stress, Rome, Italy, 09/2005.
"Expresso and Chips: Creating a Next Generation Microarray Experiment Management Systems",
Proceedings of the Next Generation Software Workshop, 17th International Parallel and Distributed Processing Symposium (IPDPS'03),, Nice, France, IEEE Computer Society, 2003.
"Photosynthetic Acclimation is Reflected in Specific Patterns of Gene Expression in Drought-Stressed Loblolly Pine",
Plant Physiology , vol. 133, no. 4, pp. pp. 1702-1716, 2003.
"Role of Superoxide Dismutase (SODs) in Controlling Oxidative Stress in Plants",
Journal of Experimental Botany, vol. 53, pp. pp. 1331-1341. , 2002.
"Studying the Functional Genomics of Stress Responses in Loblolly Pine using the Expresso Microarray Management System",
Comparative and Functional Genomics , vol. 3, pp. pp. 226-243. , 2002.
