Filters: Author is Cao, Y. [Clear All Filters]
2008
"3D Medical Training Simulation in Trauma Cases",
Game + Learning + Society Conference, 2008, 2008.
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"Algorithms and Software for Stochastic Simulation of Biochemical Reacting Systems",
Biotechnology Progress, vol. 24, no. 1, 2008.
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"Converting Macromolecular Regulatory Models from Deterministic to Stochastic Formulation",
High Performance Computing and Simulation Symposium (HPCS 2008), 2008.
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"Data-driven motion estimation with low-cost sensors",
Proceedings of the Fifth International Conference on Visual Information Engineering, July -Aug, 2008.
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"GPU-Accelerated Computation for Robust Motion Tracking Using the CUDA Framework",
The 5th IET Visual Information Engineering 2008 Conference (VIE'08), 07/2008.
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"Reconstructing Chemical Reaction Networks: Data Mining meets System Identification",
14th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (KDD'08), Feb, 2008.
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"Slow Scale Tau-leaping Method",
Computer Methods in Applied Mechanics and Engineering, 2008.
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"STAGES - System for a Tangible Animated Game: Embodied Storytelling",
Game + Learning + Society Conference, 2008., 2008.
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2007
"Comment on Nested stochastic simulation algorithm for chemical kinetic systems with disparate rates",
J. Chem. Phys, 2007.
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"The detailed comparison between StochSim and SSA",
The first q-bio conference on cellular information processing, Santa Fe, New Mexico, August, 2007.
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"The adaptive explicit-implicit tau-leap method",
SCICADE (International Conference on SCIenti c Computation And Di erential Equations), Santa Malo, France, July, 2007.
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2006
"Accuracy Limitations and the Measurement of Errors in the Stochastic Simulation of Chemically Reacting Systems",
J. Comput. Phys., 2006.
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"Adaptive tau-leaping method for biochemical systems",
minisymposium talk in SIAM Annual Meeting 2006, Boston, Massachusetts, July, 2006.
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"Efficient Stepsize Selection for the Tau-Leaping Method",
J. Chem. Phys., 2006.
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2005
"A software package for discrete stochastic simulation of chemically reacting systems",
4th SIAM conference on Computational Science and Engineering, February, 2005.
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"Accelerated Stochastic Simulation of the Sti Enzyme-Substrate Reaction",
J. Chem. Phys., 2005.
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"Avoiding Negative Populations in Explicit Tau Leaping",
J. Chem. Phys., 2005.
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"Consistency and stability of tau leaping schemes for chemical reaction systems",
SIAM Multiscale Modeling and Simulation, 2005.
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"Measurement of error in stochastic simulation: when the mean and the variance are not enough",
4th SIAM conference on Computational Science and Engineering, February, 2005.
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"Multiscale stochastic simulation algorithm with stochastic partial equilibrium assumption for chemically reacting systems",
J. Comput. Phys., 2005.
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"Sensitivity analysis of discrete stochastic systems",
Biophys. J., 2005.
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"StochKit, a new stochastic simulation toolkit",
Sixth International Conference on Systems Biology, Boston, Massachusetts, October, 2005.
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"The slow-scale stochastic simulation algorithm",
J. Chem. Phys., 2005.
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"Trapezoidal tau-lepaing formula for the stochastic simulation of biochemical systems",
Proceedings of Foundations of Systems Biology in Engineering (FOSBE 2005), pp. pp 149- 152, August, 2005.
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2004
"A posteriori error estimation and global error control for rrdinary di erential equations by the adjoint method",
SIAM J. Scienti c Computing, 2004.
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