Biblio

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2010
Lasher, C. D., C. L. Poirel, and T. M. Murali, "Networks in Computational Systems Biology", Problem Solving Handbook in Computational Biology and Bioinformatics, second edition: Springer-Verlag, 2010.
2009
III, C. C. O., T. M. Murali, and N. Ramakrishnan, "Capturing Truthiness: Mining Truth Tables in Binary Datasets", Proceedings of the 24th Annual ACM Symposium on Applied Computing (SAC'09; Data Mining Track): ACM, pp. 1467–1474, March, 2009.
Murali, T. M., and S. Aluru, "Computational Systems Biology", Algorithms and Theory of Computation Handbook, second edition: Chapman & Hall/CRC Press, 2009.
Kidane, Y., T. M. Murali, and O. Crasta, "Cross-conditional Analysis of Host Response to Pathogen Infection", 17th Annual International Conference on Intelligent Systems for Molecular Biology, 06/2009.
Driscoll, T., M. D. Dyer, T. M. Murali, and B. W. Sobral, "PIG–the pathogen interaction gateway.", Nucleic Acids Res, vol. 37, no. Database issue, pp. D647-50, 2009. Abstract
2008
2007
Dyer, M. D., T. M. Murali, and B. W. Sobral, "Computational prediction of host-pathogen protein-protein interactions.", Bioinformatics, vol. 23, no. 13, Genetics, Bioinformatics and Computational Biology Program, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA. dyermd@vbi.vt.edu, pp. i159-66, 2007. Abstract
Shoja, V., T. M. Murali, and L. Zhang, "Expression Divergence of Tandemly Arrayed Genes in Human and Mouse", Comparative and Functional Genomics, vol. 2007, pp. Article ID 60964, 8 pages, 2007.
Murali, T. M., and C. G. Rivera, "Network Legos: Building Blocks of Cellular Wiring Diagrams", Proceedings of the Eleventh Annual International Conference on Research in Computational Molecular Biology (RECOMB), pp. 47–61, 2007.
2006
Murali, T. M., C. - J. Wu, and S. Kasif, "The Art of Gene Function Prediction", Nature Biotechnology, vol. 12, pp. 1474–1475, 2006.
Massjouni, N., C. Rivera, and T. M. Murali, "VIRGO: Computational Prediction of Gene Functions", Nucleic Acids Research, vol. 34, pp. W340–W344, 2006.
Pati, A., C. Vasquez-Robinet, L. S. Heath, R. Grene, and T. M. Murali, "XcisClique: Analysis of Regulatory Bicliques", BMC Bioinformatics, vol. 7, pp. 14 pages in main article; plus 16 pages in 7 additional files, 2006.
Grothaus, G., A. Mufti, T. M. Murali, M. J. Zaki, G. Karypis, and J. Yang, "Automatic Layout and Visualisation of Biclusters", Proceedings of the 6th SIGKDD Workshop on Data Mining in Biology, pp. 23–30, 2006.
2005