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2009
Kang P., Selvarusu N., Ramakrishnan N., Ribbens C.J., Tafti D., Varadarajan S., "Modular, Fine-grained Adaptation of Parallel Programs", International Conference on Computational Science (ICCS 2009): Springer, Heidelberg, pp. 269-279, 2009. Tagged BibTex xml
Kang P., Cao Y., Ramakrishnan N., Ribbens C.J., Varadarajan S., "Modular Implementation of Adaptive Decisions in Stochastic Simulations", Proceedings of the 24th Annual ACM Symposium on Applied Computing (SAC'09): ACM, New York, pp. 995-1001, 2009. Tagged BibTex xml
2008
Fox E.A., Andrews* C., Fan W., Jiao* J., Kassahun A., Lu* S., Ma* Y., North C., Ramakrishnan N., Scarpa A., Friedman B.H., Sheetz S.D., Shoemaker D., Srinivasan* V., Yang* S., Boutwelle L., "A Digital Library for Recovery, Research, and Learning from April 16, 2007 at Virginia Tech", Traumatology, vol. 14, no. 1, pp. 20 pages, April, 2008. Tagged BibTex xml
Pati A., Jin Y., Klage K., Helm R., Heath L.S., Ramakrishnan N., "CMGSDB: Integrating Heterogeneous Caenorhabditis elegans Data Sources Using Compositional Data Mining", Nucleic Acids Research, vol. 36, pp. D69-76, 2008. Tagged BibTex xml
2007
Ramakrishnan N., Perez-Quinones M A., Shenoy A., "Compositional Specification and Realization of Mixed-Initiative Web Dialogs", International Journal of Web Engineering and Technology, Special Issue Special Issue on User Interface Description Languages, 2007. Tagged BibTex xml
Mishra D., Shaffer C.A., Ramakrishnan N., Watson L.T., Bae K.K., He J., Verstak A.A., Tranter W.H., "S4W: a problem-solving environment for wireless system design", Softw. Pract. Exper., vol. 37, no. 14, New York, NY, USA, John Wiley & Sons, Inc., pp. 1539–1558, 2007. Tagged BibTex xml
2006
Bailey-Kellogg C., Ramakrishnan N., Marathe M.V., "Spatial data mining to support pandemic preparedness. ", SIGKDD Explorations, vol. 8, no. 1, pp. 80-82, 2006. Tagged BibTex xml
Vass M.T., Shaffer C.A., Ramakrishnan N., Watson L.T., Tyson J.J., "The JigCell Model Builder: A Spreadsheet Interface for Creating Biochemical Reaction Network Models", IEEE/ACM Trans. Comput. Biol. Bioinformatics, vol. 3, no. 2, Los Alamitos, CA, USA, IEEE Computer Society Press, pp. 155–164, 2006. Tagged BibTex xml
2004
Vass M., Allen N., Shaffer C.A., Ramakrishnan N., Watson L.T., Tyson J.J., "The JigCell Model Builder and Run Manager", Bioinformatics, vol. 20, no. 18, Oxford, UK, Oxford University Press, pp. 3680–3681, 2004. Tagged BibTex xml
Skidmore R.R., Verstak A., Ramakrishnan N., Rappaport T.S., Watson L.T., He J., Varadarajan S., Shaffer C.A., Chen J., Bae K., Jiang J., Tranter W.H., "Towards integrated PSEs for wireless communications: experiences with the S4W and SitePlanner\textregistered projects", SIGMOBILE Mob. Comput. Commun. Rev., vol. 8, no. 2, New York, NY, USA, ACM, pp. 20–34, 2004. Tagged BibTex xml
2003
Verstak A., Ramakrishnan N., Watson L.T., He J., Shaffer C.A., Bae K., Jiang J., Tranter W.H., Rappaport T.S., "BSML: A binding schema markup language for data interchange in problem solving environments", Sci. Program., vol. 11, no. 3, Amsterdam, The Netherlands, The Netherlands, IOS Press, pp. 199–224, 2003. Tagged BibTex xml
Slotta D.J., Heath L.S., Ramakrishnan N., Helm R., Potts M., "Clustering Mass Spectrometry Data using Order Statistics", Proteomics, vol. 3, no. 9, pp. pp. 1687-1691. , 2003. Tagged BibTex xml
Sioson A.A., Watkinson J.I., Vasquez-Robinet C., Ellis M., Shukla M., Kumar D., Ramakrishnan N., Heath L.S., Grene R., Chevone B.I., Kafadar K., Watson L.T., "Expresso and Chips: Creating a Next Generation Microarray Experiment Management Systems", Proceedings of the Next Generation Software Workshop, 17th International Parallel and Distributed Processing Symposium (IPDPS'03),, Nice, France, IEEE Computer Society, 2003. Tagged BibTex xml
Allen N.A., Shaffer C.A., Vass M.T., Ramakrishnan N., Watson L.T., "Next generation modeling II - applications: improving the development process for eukaryotic cell cycle models with a modeling support environment", WSC '03: Proceedings of the 35th conference on Winter simulation: Winter Simulation Conference, pp. 782–790, 2003. Tagged BibTex xml
Watkinson J.I., Sioson A.A., Vasquez-Robinet C., Shukla M., Kumar D., Ellis M., Heath L.S., Ramakrishnan N., Chevone B.I., Watson L.T., van Zyl L., Egertsdotter U., Sederoff R.R., Grene R., "Photosynthetic Acclimation is Reflected in Specific Patterns of Gene Expression in Drought-Stressed Loblolly Pine", Plant Physiology , vol. 133, no. 4, pp. pp. 1702-1716, 2003. Tagged BibTex xml
2002
Slotta D.J., Heath L.S., Ramakrishnan N., "Clustering Mass Spectrometry Data using Order Statistics (Abstract)", First Annual Proteomics Data Mining Conference, Duke University, Durham, NC, 09/2002. Tagged BibTex xml
Slotta D.J., Heath L.S., Ramakrishnan N., Helm R., Potts M., "Computational Approaches to Combining Predictive Biological Models", Advanced Simulation Technologies Conference (HPC 2002), 2002, , pp. pp. 75-80. , 2002. Tagged BibTex xml
He J., Watson L.T., Ramakrishnan N., Shaffer C.A., Verstak A., Jiang J., Bae K., Tranter W.H., "Dynamic Data Structures for a Direct Search Algorithm", Comput. Optim. Appl., vol. 23, no. 1, Norwell, MA, USA, Kluwer Academic Publishers, pp. 5–25, 2002. Tagged BibTex xml
Watkinson J.I., Sioson A.A., Shukla M., Heath L.S., Ramakrishnan N., Chevone B.I., Watson L.T., Weller J.W., Sederoff R.R., van Zyl L., Alscher R.G., "Identifying Changes in Gene Expression During Drought Stress Using Expresso (Poster)", ASPB (American Society of Plant Biologists) Plant Biology 2002, Denver, CO, 08/2002. Tagged BibTex xml
Heath L.S., Ramakrishnan N., Sederoff R.R., Whetten R.W., Chevone B.I., Struble C.A., Jouenn V.Y., Chen D., van Zyl L., Grene R., "Studying the Functional Genomics of Stress Responses in Loblolly Pine using the Expresso Microarray Management System", Comparative and Functional Genomics , vol. 3, pp. pp. 226-243. , 2002. Tagged BibTex xml
Heath L.S., Ramakrishnan N., "The Emerging Landscape of Bioinformatics Software Systems", IEEE Computer , vol. 35, pp. pp. 41-45. , 07/2002. Tagged BibTex xml
2001
Alscher R.G., Chevone B.I., Heath L.S., Ramakrishnan N., "Expresso -- A Problem Solving Environment for Bioinformatics: Finding Answers With Microarray Technology", Advanced Simulation Technologies Conference (HPC 2001), 2001, , pp. pp. 64-69., 2001. Tagged BibTex xml
Goncalves M., Zafer A., Ramakrishnan N., Fox E.A., "Modeling and Building Personalized Digital Libraries with PIPE and 5SL", Proceedings of the Joint DELOS-NSF Workshop on Personalizationa nd Recommender Systems in Digital Libraries, Dublin, Ireland, June 2001. Tagged BibTex xml
Robert G. Capra I., Perez-Quinones M.A., Ramakrishnan N., WebContext: remote access to shared context, , Orlando, Florida, ACM Press, pp. 1-9, 2001. Tagged BibTex xml
2000
Lenwood S. Heath, Ramakrishnan N., Sederoff R.R., van Zyl L., Chen D., and Y.-H. Sun, Chevone B.I., Li S -H., Ye K., Whetten R., Alscher R.G., "Effects of Drought Stress on Gene Expression Patterns in the Needles of Loblolly Pine Trees: Towards a PSE for the Analysis of Microarray Data (Poster)", Gordon Conference on Biological Regulatory Mechanisms, Holderness, NH, 07/2000. Tagged BibTex xml