Filters: Author is Ramakrishnan, Naren [Clear All Filters]
2009
"Modular, Fine-grained Adaptation of Parallel Programs",
International Conference on Computational Science (ICCS 2009): Springer, Heidelberg, pp. 269-279, 2009.
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"Modular Implementation of Adaptive Decisions in Stochastic Simulations",
Proceedings of the 24th Annual ACM Symposium on Applied Computing (SAC'09): ACM, New York, pp. 995-1001, 2009.
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2008
"A Digital Library for Recovery, Research, and Learning from April 16, 2007 at Virginia Tech",
Traumatology, vol. 14, no. 1, pp. 20 pages, April, 2008.
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"CMGSDB: Integrating Heterogeneous Caenorhabditis elegans Data Sources Using Compositional Data Mining",
Nucleic Acids Research, vol. 36, pp. D69-76, 2008.
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2007
"Compositional Specification and Realization of Mixed-Initiative Web Dialogs",
International Journal of Web Engineering and Technology, Special Issue Special Issue on User Interface Description Languages, 2007.
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"S4W: a problem-solving environment for wireless system design",
Softw. Pract. Exper., vol. 37, no. 14, New York, NY, USA, John Wiley & Sons, Inc., pp. 1539–1558, 2007.
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2006
"Spatial data mining to support pandemic preparedness. ",
SIGKDD Explorations, vol. 8, no. 1, pp. 80-82, 2006.
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"The JigCell Model Builder: A Spreadsheet Interface for Creating Biochemical Reaction Network Models",
IEEE/ACM Trans. Comput. Biol. Bioinformatics, vol. 3, no. 2, Los Alamitos, CA, USA, IEEE Computer Society Press, pp. 155–164, 2006.
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2004
"The JigCell Model Builder and Run Manager",
Bioinformatics, vol. 20, no. 18, Oxford, UK, Oxford University Press, pp. 3680–3681, 2004.
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"Towards integrated PSEs for wireless communications: experiences with the S4W and SitePlanner\textregistered projects",
SIGMOBILE Mob. Comput. Commun. Rev., vol. 8, no. 2, New York, NY, USA, ACM, pp. 20–34, 2004.
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2003
"BSML: A binding schema markup language for data interchange in problem solving environments",
Sci. Program., vol. 11, no. 3, Amsterdam, The Netherlands, The Netherlands, IOS Press, pp. 199–224, 2003.
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"Clustering Mass Spectrometry Data using Order Statistics",
Proteomics, vol. 3, no. 9, pp. pp. 1687-1691. , 2003.
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"Expresso and Chips: Creating a Next Generation Microarray Experiment Management Systems",
Proceedings of the Next Generation Software Workshop, 17th International Parallel and Distributed Processing Symposium (IPDPS'03),, Nice, France, IEEE Computer Society, 2003.
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"Next generation modeling II - applications: improving the development process for eukaryotic cell cycle models with a modeling support environment",
WSC '03: Proceedings of the 35th conference on Winter simulation: Winter Simulation Conference, pp. 782–790, 2003.
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"Photosynthetic Acclimation is Reflected in Specific Patterns of Gene Expression in Drought-Stressed Loblolly Pine",
Plant Physiology , vol. 133, no. 4, pp. pp. 1702-1716, 2003.
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2002
"Clustering Mass Spectrometry Data using Order Statistics (Abstract)",
First Annual Proteomics Data Mining Conference, Duke University, Durham, NC, 09/2002.
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"Computational Approaches to Combining Predictive Biological Models",
Advanced Simulation Technologies Conference (HPC 2002), 2002, , pp. pp. 75-80. , 2002.
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"Dynamic Data Structures for a Direct Search Algorithm",
Comput. Optim. Appl., vol. 23, no. 1, Norwell, MA, USA, Kluwer Academic Publishers, pp. 5–25, 2002.
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"Identifying Changes in Gene Expression During Drought Stress Using Expresso (Poster)",
ASPB (American Society of Plant Biologists) Plant Biology 2002, Denver, CO, 08/2002.
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"Studying the Functional Genomics of Stress Responses in Loblolly Pine using the Expresso Microarray Management System",
Comparative and Functional Genomics , vol. 3, pp. pp. 226-243. , 2002.
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"The Emerging Landscape of Bioinformatics Software Systems",
IEEE Computer , vol. 35, pp. pp. 41-45. , 07/2002.
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2001
"Expresso -- A Problem Solving Environment for Bioinformatics: Finding Answers With Microarray Technology",
Advanced Simulation Technologies Conference (HPC 2001), 2001, , pp. pp. 64-69., 2001.
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"Modeling and Building Personalized Digital Libraries with PIPE and 5SL",
Proceedings of the Joint DELOS-NSF Workshop on Personalizationa nd Recommender Systems in Digital Libraries, Dublin, Ireland, June 2001.
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WebContext: remote access to shared context,
, Orlando, Florida, ACM Press, pp. 1-9, 2001.
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2000
"Effects of Drought Stress on Gene Expression Patterns in the Needles of Loblolly Pine Trees: Towards a PSE for the Analysis of Microarray Data (Poster)",
Gordon Conference on Biological Regulatory Mechanisms, Holderness, NH, 07/2000.
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