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Filters: Author is John J. Tyson  [Clear All Filters]
2008
Panning T.D., Watson L.T., Allen N.A., Chen K.C., Shaffer C.A., Tyson J.J., "Deterministic parallel global parameter estimation for a model of the budding yeast cell cycle", J. of Global Optimization, vol. 40, no. 4, Hingham, MA, USA, Kluwer Academic Publishers, pp. 719–738, 2008. Tagged BibTex xml
2007
Panning T.D., Watson L.T., Shaffer C.A., Tyson J.J., "A Mathematical Programming Formulation for the Budding Yeast Cell Cycle", Simulation, vol. 83, no. 7, San Diego, CA, USA, Society for Computer Simulation International, pp. 497–514, 2007. Tagged BibTex xml
2006
Sauro H.M., Harel D., Kwiatkowska M., Shaffer C.A., Uhrmacher A.M., Hucka M., Mendes P., Strömback L., Tyson J.J., "Challenges for modeling and simulation methods in systems biology", WSC '06: Proceedings of the 38th conference on Winter simulation: Winter Simulation Conference, pp. 1720–1730, 2006. Tagged BibTex xml
Vass M.T., Shaffer C.A., Ramakrishnan N., Watson L.T., Tyson J.J., "The JigCell Model Builder: A Spreadsheet Interface for Creating Biochemical Reaction Network Models", IEEE/ACM Trans. Comput. Biol. Bioinformatics, vol. 3, no. 2, Los Alamitos, CA, USA, IEEE Computer Society Press, pp. 155–164, 2006. Tagged BibTex xml
Shaffer C.A., Randhawa R., Tyson J.J., "The role of composition and aggregation in modeling macromolecular regulatory networks", WSC '06: Proceedings of the 38th conference on Winter simulation: Winter Simulation Conference, pp. 1628–1636, 2006. Tagged BibTex xml
2004
Vass M., Allen N., Shaffer C.A., Ramakrishnan N., Watson L.T., Tyson J.J., "The JigCell Model Builder and Run Manager", Bioinformatics, vol. 20, no. 18, Oxford, UK, Oxford University Press, pp. 3680–3681, 2004. Tagged BibTex xml