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Filters: Author is D. Gillespie  [Clear All Filters]
2009
Gillespie D., Cao Y., Sanft K., Petzold L., " The subtle business of model reduction for stochastic chemical kinetics ", J. Chem. Phys. , 2009. Tagged BibTex xml
2008
Li H., Cao Y., Petzold L., Gillespie D., "Algorithms and Software for Stochastic Simulation of Biochemical Reacting Systems", Biotechnology Progress, vol. 24, no. 1, 2008. Tagged BibTex xml
2006
Cao Y., Petzold L., Gillespie D., "Adaptive tau-leaping method for biochemical systems", minisymposium talk in SIAM Annual Meeting 2006, Boston, Massachusetts, July, 2006. Tagged BibTex xml
Cao Y., Gillespie D., Petzold L., "Efficient Stepsize Selection for the Tau-Leaping Method", J. Chem. Phys., 2006. Tagged BibTex xml
2005
Cao Y., Gillespie D., Petzold L., "Accelerated Stochastic Simulation of the Sti Enzyme-Substrate Reaction", J. Chem. Phys., 2005. Tagged BibTex xml
Cao Y., Gillespie D., Petzold L., "Avoiding Negative Populations in Explicit Tau Leaping", J. Chem. Phys., 2005. Tagged BibTex xml
Rathinam M., Petzold L., Cao Y., Gillespie D., "Consistency and stability of tau leaping schemes for chemical reaction systems", SIAM Multiscale Modeling and Simulation, 2005. Tagged BibTex xml
Cao Y., Petzold L., Gillespie D., "Multiscale stochastic simulation algorithm with stochastic partial equilibrium assumption for chemically reacting systems", J. Comput. Phys., 2005. Tagged BibTex xml
Cao Y., Gillespie D., Petzold L., "The slow-scale stochastic simulation algorithm", J. Chem. Phys., 2005. Tagged BibTex xml
2004
Cao Y., Petzold L., Rathinam M., Gillespie D., "The numerical stability of leaping methods for stochastic simulation of chemically reacting systems", J. Chem. Phys., 2004. Tagged BibTex xml
2003
Rathinam M., Petzold L., Cao Y., Gillespie D., "Sti ness in stochastic chemically reacting systems: The implicit tau-leaping method", J. Chem. Phys., 2003. Tagged BibTex xml
Cao Y., Petzold L., Gillespie D., "Towards the multiscale simulation of biochemical systems", the workshop of U.S. Army Research Oce, Institute for Collaborative Biotechnologies site visit, UCSB, July, 2003. Tagged BibTex xml