Filters: Author is L. Petzold [Clear All Filters]
2009
" The subtle business of model reduction for stochastic chemical kinetics ",
J. Chem. Phys. , 2009.
Tagged BibTex xml
2008
"Algorithms and Software for Stochastic Simulation of Biochemical Reacting Systems",
Biotechnology Progress, vol. 24, no. 1, 2008.
Tagged BibTex xml
"Slow Scale Tau-leaping Method",
Computer Methods in Applied Mechanics and Engineering, 2008.
Tagged BibTex xml
2006
"Accuracy Limitations and the Measurement of Errors in the Stochastic Simulation of Chemically Reacting Systems",
J. Comput. Phys., 2006.
Tagged BibTex xml
"Adaptive tau-leaping method for biochemical systems",
minisymposium talk in SIAM Annual Meeting 2006, Boston, Massachusetts, July, 2006.
Tagged BibTex xml
"Efficient Stepsize Selection for the Tau-Leaping Method",
J. Chem. Phys., 2006.
Tagged BibTex xml
2005
"A software package for discrete stochastic simulation of chemically reacting systems",
4th SIAM conference on Computational Science and Engineering, February, 2005.
Tagged BibTex xml
"Accelerated Stochastic Simulation of the Sti Enzyme-Substrate Reaction",
J. Chem. Phys., 2005.
Tagged BibTex xml
"Avoiding Negative Populations in Explicit Tau Leaping",
J. Chem. Phys., 2005.
Tagged BibTex xml
"Consistency and stability of tau leaping schemes for chemical reaction systems",
SIAM Multiscale Modeling and Simulation, 2005.
Tagged BibTex xml
"Measurement of error in stochastic simulation: when the mean and the variance are not enough",
4th SIAM conference on Computational Science and Engineering, February, 2005.
Tagged BibTex xml
"Multiscale stochastic simulation algorithm with stochastic partial equilibrium assumption for chemically reacting systems",
J. Comput. Phys., 2005.
Tagged BibTex xml
"Sensitivity analysis of discrete stochastic systems",
Biophys. J., 2005.
Tagged BibTex xml
"StochKit, a new stochastic simulation toolkit",
Sixth International Conference on Systems Biology, Boston, Massachusetts, October, 2005.
Tagged BibTex xml
"The slow-scale stochastic simulation algorithm",
J. Chem. Phys., 2005.
Tagged BibTex xml
"Trapezoidal tau-lepaing formula for the stochastic simulation of biochemical systems",
Proceedings of Foundations of Systems Biology in Engineering (FOSBE 2005), pp. pp 149- 152, August, 2005.
Tagged BibTex xml
2004
"A posteriori error estimation and global error control for rrdinary di erential equations by the adjoint method",
SIAM J. Scienti c Computing, 2004.
Tagged BibTex xml
"An error estimate for matrix equations",
Applied Numerical Mathematics, 2004.
Tagged BibTex xml
"Efficient formulation of the stochastic simulation algorithm for chemically reacting systems",
J. Chem. Phys., 2004.
Tagged BibTex xml
"Efficient formulation of the stochastic simulation algorithm for chemically reacting systems",
the 5th International Conference on Systems Biology, October, 2004.
Tagged BibTex xml
"Stochastic sensitivity analysis of a circadian gene network",
the 5th International Conference on Systems Biology, Heidelberg, Germany, October, 2004.
Tagged BibTex xml
"The numerical stability of leaping methods for stochastic simulation of chemically reacting systems",
J. Chem. Phys., 2004.
Tagged BibTex xml
2003
"A subspace error estimate for linear systems",
SIAM J. Mat. Anal. Appl., 2003.
Tagged BibTex xml
"Adaptive numerical methods for sensitivity analysis of di erential-algebraic equations and partial di erential equations",
Proceedings,Workshop on Modeling and Simulation in Chemical Engineering, Coimbra, Portugal, 2003.
Tagged BibTex xml
"Sti ness in stochastic chemically reacting systems: The implicit tau-leaping method",
J. Chem. Phys., 2003.
Tagged BibTex xml